Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00012 ATGGGAGACAAGCCTGAAGTGTTGGAGGCTGTGTTAAAGGAAGCTGTGGATTTGGAGAACATACCCATTGAGGAGGTTTTTGATAATCTGAGATGTAGCAGAGAAGGTCTCACCAGTGAGGCTGCTGAGGAGAGGTTGGCCATTTTTGGCCACAACAAGCTTGAGGAGAAAAAGGAGAACAAGTTCTTGACGTTCTTGGGATTCATGTGGAATCCTCTGTCTTGGGTTATGGAGGCAGCTGCTATAATGGCAATTGCGCTTGCAAATGGAGGGGTGACAATGGAGGGGAAGGCTCCTGATTGGCAAGACTTTGTGGGTATCATCACCTTGCTTGTCATCAATTCAACTATCAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTCGCTCCAAAAGCCAAGGTTCTTCGAGATGGTAGGTGGAGTGAGCATGATGCTGCGGTCCTGGTTCCCGGTGACATAGTCAGCATCAAACTTGGAGATATTGTACCAGCAGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGATCAGTCTGCACTCACAGGTGAGTCCCTGCCAGTAACAAAGGGCCCTGGTGATGGTGTATATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTTCATACCTTCTTTGGCAAAGCTGCTCACCTTGTAGATACTACCAATCAAGTTGGTCACTTTCAAAAGGTCTTGACTGCAATTGGGAACTTCTGCATTTGCTCAATTGCTGTGGGGATGGTTATTGAGATTATTGTTATGTATCCCATCCAAGACCGAGCCTATCGTCCTGGAATTGATAACCTCCTTGTACTTCTTATTGGAGGAATTCCAATTGCCATGCCCACAGTTCTGTCAGTGACCATGGCCATTGGTTCTCATAGGCTATCTCAGCAGGGTGCAATCACAAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTAACTTTAAATAAGCTTACTGTAGACAAAAATCTTATTGAGGTTTTTGCAAAAGGAGTGGATCCAGATACTGTTGTTTTGATGGCTGCTCAAGCTTCCAGACTTGAGAATCAAGATGCAATTGATACGGCCATAGTTGGGATGCTGGCTGATCCAAAGGAGGCACGTGCTGGTATACAAGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGCGAACAGCATTGACTTATATTGATCGTGATGGTAAAATGCATAGAGTAAGCAAGGGAGCACCAGAACAGATCCTAAATCTTGCGCAAAATAAGTCAGACATTGAACGTAGAGTTCATGCAGTGATAGACAAGTTTGCAGAGCGTGGTTTACGATCTCTTGCTGTAGCATACCAGGAAGTTCCAGATGGAACGAAGGAGAGTGCTGGAGGTCCTTGGCAATTTATTGGCCTTATGCCTCTCTTTGATCCACCTAGGCATGATAGTGCAGAAACAATACGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCGTTACTTGGGCAAGATAAGGATGAATCCATTGCTGCCTTACCCATTGACGAACTAATAGAAAAAGCTGATGGATTCGCTGGTGTATTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCCAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCCCTCAAGAAGGCTGACATTGGTATAGCTGTTGCTGATGCTACTGATGCAGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATAAGTGCTGTTTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACGATTTATGCAGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAGTTTGACTTTCCACCCTTTATGGTGCTCATTATTGCCATCCTAAATGATGGTACTATTATGACTATTTCAAAAGATCGGGTAAAACCATCACCTCTGCCAGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCGTTGTGCTTGGAAGTTACTTGGCTATCATGACAGTCATATTCTTTTGGGCAGCATACAAAACAGATTTCTTCCCTCGAGTGTTTGGGGTCTCAAGCCTAGAAAAAACTGCTCATGATGATTTCCGAAAACTTGCCTCTGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCTCTTATATTTGTAACTCGATCTCGAGGTTGGTCATATGTTGAGCGTCCTGGTTTATTGTTGGTGGCTGCTTTTATTGTTGCTCAACTGATTGCCACTTTGATTGCTGTATATGCAAGCTGGAGCTTTGCTGCAATTGAAGGAATAGGTTGGGGTTGGGCTGGTGTAATATGGTTATATAACTTAATATTCTACATCCCACTTGATTTCATTAAGTTTTTCATTCGCTATGCTTTGAGCGGAAGGGCTTGGGATCTTGTCATTGAGAAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGGAAGGAACAACGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAACCACCCGATACCAAGATGTTCACTGAGCGCACACATGTCAGCGAACTCAGTCAAATGGCTGAGGAAGCCAAAAGGAGAGCCGAAATTGCAAGGTTAAGAGAACTTCATACACTAAAAGGTCATGTAGAATCAGTTGTGAGATTGAAGGGGCTTGACATAGACACAATTCAGCAAGCATACACAGTCTGA 2883 0.4384 MGDKPEVLEAVLKEAVDLENIPIEEVFDNLRCSREGLTSEAAEERLAIFGHNKLEEKKENKFLTFLGFMWNPLSWVMEAAAIMAIALANGGVTMEGKAPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEHDAAVLVPGDIVSIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVLTAIGNFCICSIAVGMVIEIIVMYPIQDRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDPDTVVLMAAQASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAQNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPDGTKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAIMTVIFFWAAYKTDFFPRVFGVSSLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFIVAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNLIFYIPLDFIKFFIRYALSGRAWDLVIEKRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHVSELSQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00012 960 SUPERFAMILY Calcium ATPase, transduction domain A 138 235 IPR008250 -
Gabi1884g00012 960 FunFam ATPase 4 plasma membrane-type 579 825 - -
Gabi1884g00012 960 Gene3D - 332 631 IPR023214 -
Gabi1884g00012 960 Gene3D - 138 222 - -
Gabi1884g00012 960 CDD P-type_ATPase_H 36 851 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi1884g00012 960 PRINTS P-type cation-transporting ATPase superfamily signature 185 199 - -
Gabi1884g00012 960 PRINTS P-type cation-transporting ATPase superfamily signature 489 500 - -
Gabi1884g00012 960 PRINTS P-type cation-transporting ATPase superfamily signature 511 521 - -
Gabi1884g00012 960 PRINTS P-type cation-transporting ATPase superfamily signature 335 349 - -
Gabi1884g00012 960 PRINTS P-type cation-transporting ATPase superfamily signature 594 613 - -
Gabi1884g00012 960 PRINTS P-type cation-transporting ATPase superfamily signature 617 629 - -
Gabi1884g00012 960 PRINTS H+-transporting ATPase (proton pump) signature 451 469 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00012 960 PRINTS H+-transporting ATPase (proton pump) signature 594 610 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00012 960 PRINTS H+-transporting ATPase (proton pump) signature 566 582 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00012 960 PRINTS H+-transporting ATPase (proton pump) signature 770 791 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00012 960 PRINTS H+-transporting ATPase (proton pump) signature 625 650 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00012 960 SUPERFAMILY HAD-like 331 641 IPR036412 -
Gabi1884g00012 960 Gene3D - 347 494 IPR023299 GO:0000166
Gabi1884g00012 960 SFLD p-type atpase 317 645 IPR044492 -
Gabi1884g00012 960 Gene3D - 100 825 - -
Gabi1884g00012 960 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Gabi1884g00012 960 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 816 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi1884g00012 960 Gene3D - 910 960 - -
Gabi1884g00012 960 SFLD C1.7: P-type atpase like 317 645 - -
Gabi1884g00012 960 Coils Coil 911 931 - -
Gabi1884g00012 960 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Gabi1884g00012 960 PANTHER CALCIUM-TRANSPORTING ATPASE 19 893 - -
Gabi1884g00012 960 FunFam Plasma membrane ATPase 347 494 - -
Gabi1884g00012 960 ProSitePatterns E1-E2 ATPases phosphorylation site. 337 343 IPR018303 -
Gabi1884g00012 960 Pfam E1-E2 ATPase 136 314 - -
Gabi1884g00012 960 FunFam Plasma membrane ATPase 138 222 - -
Gabi1884g00012 960 FunFam Plasma membrane ATPase 488 642 - -
Gabi1884g00012 960 Pfam haloacid dehalogenase-like hydrolase 331 608 - -
Gabi1884g00012 960 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 857 IPR023298 -
Gabi1884g00012 960 NCBIfam HAD-IC family P-type ATPase 569 682 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00012 960 NCBIfam HAD-IC family P-type ATPase 107 371 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1884g00012 Gabi-Chr1884 42161 48399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00012 1 960 Primary Pumps ATPases AT5G62670 93.021 0.0 1796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1884g00012 K01535 - cpap:110819640 1747.25