Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1884g00011 ATGGGAGACAAGCCTGAAGTGTTGGAGGCTGTGTTAAAGGAAGCTGTGGATTTGGAGAACATACCCATTGAGGAGGTTTTTGATAATCTGAGATGTAGCAGAGAAGGTCTCACCAGTGAGGCTGCTGAGGAGAGGTTGGCCATTTTTGGCCACAACAAGCTTGAGGAGAAAAAGGAGAACAAGTTCTTGACGTTCTTGGGATTCATGTGGAATCCTCTGTCTTGGGTTATGGAGGCAGCTGCTATAATGGCAATTGCGCTTGCAAATGGAGGGGGGAAGGCTCCTGATTGGCAAGACTTTGTGGGTATCATCACCTTGCTTGTCATCAATTCAACTATCAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCAGCAGCTCTCATGGCTCGTCTCGCTCCAAAAGCCAAGGTTCTTCGAGATGGTAGGTGGAGTGAGCATGATGCTGCGGTCCTGGTTCCCGGTGACATAGTCAGCATCAAACTTGGAGATATTGTACCAGCAGATGCTCGTCTTCTTGAAGGGGATCCTTTGAAAATTGATCAGTCTGCACTCACAGGTGAGTCCCTGCCAGTAACAAAGGGCCCTGGTGATGGTGTATATTCTGGTTCTACCTGCAAACAAGGAGAGATTGAAGCTGTGGTCATTGCTACTGGTGTTCATACCTTCTTTGGCAAAGCTGCTCACCTTGTAGATACTACCAATCAAGTTGGTCACTTTCAAAAGGTAACACGAGAGAACATTACCTTTTTTTTTGTCTTGACTGCAATTGGGAACTTCTGCATTTGCTCAATTGCTGTGGGGATGGTTATTGAGATTATTGTTATGTATCCCATCCAAGACCGAGCCTATCGTCCTGGAATTGATAACCTCCTTGTACTTCTTATTGGAGGAATTCCAATTGCCATGCCCACAGTTCTGTCAGTGACCATGGCCATTGGTTCTCATAGGCTATCTCAGCAGGGTGCAATCACAAAGAGGATGACAGCCATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACTCTAACTTTAAATAAGCTTACTGTAGACAAAAATCTTATTGAGGTTTTTGCAAAAGGAGTGGATCCAGATACTGTTGTTTTGATGGCTGCTCAAGCTTCCAGACTTGAGAATCAAGATGCAATTGATACGGCCATAGTTGGGATGCTGGCTGATCCAAAGGAGGCACGTGCTGGTATACAAGAAGTACATTTTCTTCCTTTCAATCCTACTGATAAGCGAACAGCATTGACTTATATTGATCGTGATGGTAAAATGCATAGAGTAAGCAAGGGAGCACCAGAACAGATCCTAAATCTTGCGCAAAATAAGTCAGACATTGAACGTAGAGTTCATGCAGTGATAGACAAGTTTGCAGAGCGTGGTTTACGATCTCTTGCTGTAGCATACCAGGAAGTTCCAGATGGAACGAAGGAGAGTGCTGGAGGTCCTTGGCAATTTATTGGCCTTATGCCTCTCTTTGATCCACCTAGGCATGATAGTGCAGAAACAATACGGAGGGCACTAAACCTTGGAGTAAATGTCAAAATGATTACAGGGGATCAGCTAGCTATAGGAAAGGAAACAGGCCGTCGCTTGGGAATGGGTACCAATATGTATCCTTCATCTGCGTTACTTGGGCAAGATAAGGATGAATCCATTGCTGCCTTACCCATTGACGAACTAATAGAAAAAGCTGATGGATTCGCTGGTGTATTTCCTGAGCACAAGTATGAGATTGTGAAACGCTTGCAAGCCAGGAAACATATTTGTGGAATGACTGGTGATGGAGTGAATGATGCACCTGCCCTCAAGAAGGCTGACATTGGTATAGCTGTTGCTGATGCTACTGATGCAGCTCGTAGTGCATCTGATATTGTTTTAACAGAACCTGGCCTTAGTGTTATTATAAGTGCTGTTTTGACCAGCCGAGCTATCTTCCAGAGAATGAAAAATTATACGATTTATGCAGTCTCAATTACAATTCGTATTGTGCTTGGTTTCATGTTGCTGGCTCTCATATGGAAGTTTGACTTTCCACCCTTTATGGTGCTCATTATTGCCATCCTAAATGATGGTACTATTATGACTATTTCAAAAGATCGGGTAAAACCATCACCTCTGCCAGATAGCTGGAAGCTAGCAGAGATATTTACTACTGGCGTTGTGCTTGGAAGTTACTTGGCTATCATGACAGTCATATTCTTTTGGGCAGCATACAAAACAGATTTCTTCCCTCGAGTGTTTGGGGTCTCAAGCCTAGAAAAAACTGCTCATGATGATTTCCGAAAACTTGCCTCTGCAATCTATCTTCAAGTGAGCACTATTAGTCAGGCTCTTATATTTGTAACTCGATCTCGAGGTTGGTCATATGTTGAGCGTCCTGGTTTATTGTTGGTGGCTGCTTTTATTGTTGCTCAACTGATTGCCACTTTGATTGCTGTATATGCAAGCTGGAGCTTTGCTGCAATTGAAGGAATAGGTTGGGGTTGGGCTGGTGTAATATGGTTATATAACTTAATATTCTACATCCCACTTGATTTCATTAAGTTTTTCATTCGCTATGCTTTGAGCGGAAGGGCTTGGGATCTTGTCATTGAGAAAAGGATTGCATTCACAAGGCAAAAGGACTTTGGGAAGGAACAACGGGAACTTCAATGGGCACATGCACAAAGAACATTGCATGGATTACAACCACCCGATACCAAGATGTTCACTGAGCGCACACATGTCAGCGAACTCAGTCAAATGGCTGAGGAAGCCAAAAGGAGAGCCGAAATTGCAAGGTTAAGAGAACTTCATACACTAAAAGGTCATGTAGAATCAGTTGTGAGATTGAAGGGGCTTGACATAGACACAATTCAGCAAGCATACACAGTCTGA 2901 0.4367 MGDKPEVLEAVLKEAVDLENIPIEEVFDNLRCSREGLTSEAAEERLAIFGHNKLEEKKENKFLTFLGFMWNPLSWVMEAAAIMAIALANGGGKAPDWQDFVGIITLLVINSTISFIEENNAGNAAAALMARLAPKAKVLRDGRWSEHDAAVLVPGDIVSIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKGPGDGVYSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDTTNQVGHFQKVTRENITFFFVLTAIGNFCICSIAVGMVIEIIVMYPIQDRAYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDPDTVVLMAAQASRLENQDAIDTAIVGMLADPKEARAGIQEVHFLPFNPTDKRTALTYIDRDGKMHRVSKGAPEQILNLAQNKSDIERRVHAVIDKFAERGLRSLAVAYQEVPDGTKESAGGPWQFIGLMPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQDKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFPPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLAEIFTTGVVLGSYLAIMTVIFFWAAYKTDFFPRVFGVSSLEKTAHDDFRKLASAIYLQVSTISQALIFVTRSRGWSYVERPGLLLVAAFIVAQLIATLIAVYASWSFAAIEGIGWGWAGVIWLYNLIFYIPLDFIKFFIRYALSGRAWDLVIEKRIAFTRQKDFGKEQRELQWAHAQRTLHGLQPPDTKMFTERTHVSELSQMAEEAKRRAEIARLRELHTLKGHVESVVRLKGLDIDTIQQAYTV 966
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1884g00011 966 Pfam haloacid dehalogenase-like hydrolase 337 614 - -
Gabi1884g00011 966 NCBIfam plasma-membrane proton-efflux P-type ATPase 36 822 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi1884g00011 966 Gene3D - 134 218 - -
Gabi1884g00011 966 NCBIfam HAD-IC family P-type ATPase 103 377 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 NCBIfam HAD-IC family P-type ATPase 575 688 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 SUPERFAMILY HAD-like 337 647 IPR036412 -
Gabi1884g00011 966 Gene3D - 338 637 IPR023214 -
Gabi1884g00011 966 PANTHER CALCIUM-TRANSPORTING ATPASE 19 899 - -
Gabi1884g00011 966 Gene3D - 96 831 - -
Gabi1884g00011 966 Gene3D - 916 966 - -
Gabi1884g00011 966 SFLD Haloacid Dehalogenase 323 651 - -
Gabi1884g00011 966 SUPERFAMILY Calcium ATPase, transduction domain A 134 231 IPR008250 -
Gabi1884g00011 966 CDD P-type_ATPase_H 36 857 IPR006534 GO:0008553|GO:0016020|GO:0120029
Gabi1884g00011 966 Gene3D - 353 500 IPR023299 GO:0000166
Gabi1884g00011 966 PRINTS P-type cation-transporting ATPase superfamily signature 181 195 - -
Gabi1884g00011 966 PRINTS P-type cation-transporting ATPase superfamily signature 623 635 - -
Gabi1884g00011 966 PRINTS P-type cation-transporting ATPase superfamily signature 341 355 - -
Gabi1884g00011 966 PRINTS P-type cation-transporting ATPase superfamily signature 600 619 - -
Gabi1884g00011 966 PRINTS P-type cation-transporting ATPase superfamily signature 517 527 - -
Gabi1884g00011 966 PRINTS P-type cation-transporting ATPase superfamily signature 495 506 - -
Gabi1884g00011 966 FunFam Plasma membrane ATPase 134 218 - -
Gabi1884g00011 966 SUPERFAMILY Calcium ATPase, transmembrane domain M 17 863 IPR023298 -
Gabi1884g00011 966 ProSitePatterns E1-E2 ATPases phosphorylation site. 343 349 IPR018303 -
Gabi1884g00011 966 FunFam Plasma membrane ATPase 353 500 - -
Gabi1884g00011 966 SFLD p-type atpase 323 651 IPR044492 -
Gabi1884g00011 966 SMART Cation_ATPase_N_a_2 17 89 IPR004014 -
Gabi1884g00011 966 Pfam Cation transporter/ATPase, N-terminus 20 83 IPR004014 -
Gabi1884g00011 966 FunFam Plasma membrane ATPase 494 648 - -
Gabi1884g00011 966 FunFam ATPase 4 plasma membrane-type 585 831 - -
Gabi1884g00011 966 Pfam E1-E2 ATPase 132 320 - -
Gabi1884g00011 966 PRINTS H+-transporting ATPase (proton pump) signature 572 588 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 PRINTS H+-transporting ATPase (proton pump) signature 776 797 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 PRINTS H+-transporting ATPase (proton pump) signature 631 656 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 PRINTS H+-transporting ATPase (proton pump) signature 600 616 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 PRINTS H+-transporting ATPase (proton pump) signature 457 475 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi1884g00011 966 Coils Coil 917 937 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1884g00011 Gabi-Chr1884 42161 48399 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1884g00011 1 966 Primary Pumps ATPases AT5G62670 92.443 0.0 1792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1884g00011 K01535 - cpap:110819640 1743.4