Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1881g00017 ATGTTCAAGGAATGCCAAAACCCAGACGAAAACCAGCGACGTCAGATGGGGGAGGAGCTTGGTCTTAAGCCAATACAAATCAAATTTTGGTTTCAAAATAAGAGGATACAAGTGAAGAACCTAAGTGAGCGATATAAGAACAATGCTCTTCGGCTTGAGTATGAAAGTTTACAATTAGAAAACTTAAGAATGAAAGAGGCTTTGAAGAATTTACTTTGCTCATCTTGTGGGGGTCCATCCTTAGGGGATGAAGTGCGCAACCATCATTTGCAAAAGTTAAGGCTAGAAAATTCACGATTAAATCAAGATCATGAGAGATTATCCAAACTTTTGGAAAACAATAGATGGCTACCTCTTCCACCTTCATCTTCATATGATCCCTCCGGAGGAAGTGATCTGAATCAAAATATTCCTGTTCATGATCCCCACATTCGTGCTTTTATTGAGTCACTTGATCAAAACATTCCAGCTCCTACTGAAACGAATGATGAAATATTTTCACCTCTTACTTCTCCTCTTGATGAAGATATTTCAACACTTGAGCAGGAGATTCCTTTTCCCTTTCTTGATCTAGATTTTGGTGCAGTTAGTGGAGTTTCTAACGATGATATGTTGCATCATCCAACGAACACAACTATGGACAGTGAGAGGGCATTTATGCTGGAGACTGCAAAAAGTGCTATGGAAGAATTAATAAGACTTTTGCGTATGAATGAACCATTTTGGTTCAGATCTGTGAATGATGGAAGATTCGTTCTTCAACGAGAAAGTTACAAAAATATCTTTAACAAAGATGATGAATTAAATGAACCTTATGCTCGGATAGAGTCCTCAAAAGATGCACGGATAGTGAGCATGAGGGGGACACAGTTGGTTGATATGTTTTTGAATTCGGACAAATGGGTTGATCTTTTCCCAACAATTGTTCAAAAAGCACATACAATTGAAGTACTTGAAAGCGGTTTGTTGGGAAGCCGAGACGGAGCTTTGCAGTTGGTGAATGCAGAAATGCACATACTTTCACCATTGGTTCCAACTCGGCAATTCTCCTTCATTCGTTATTGTAAACAAGTTGAAGTCGGTGTGTGGGCTATAGCCGATGTGTCATTTGATTCCTCCAAATATGGCGTCGCTCTTTCTCGTGCTTGGAGACACCCCTCTGGATGCATGATTAACGAAATGATCGATGGGTCCTGCATGGTTACTTGGGTGGAGCATGTGGAAGTGGATGATAAGATCCAAACTCACCAGCTTTTCAGAGAAATTATTTGTGACAATAATTCATACGGAGCTGAAAGATGGGTTTTGACACTTGAAAGAATGTGTGAGCGATTTGCAAGTGCCGCGCTTGAAAATATACCTAGTTGTGACGCTGGAGTGATAAGTATAGCTGAAGGAAGGAGGAGTGTTATGAAGCTTGCTCATCGCATGGTTAAGATTTTTTGTGGAAATTTAGACATGTCAGGTAACATGGAATTGCCACATATAAACAGTGGGGTTATGGTGTCTGTTCGGAATAACACAGAGCCAGGTTTGCCAAACGGCATCATTGTCACTGCTGCTACCTCCTTTTGGCTTCCTCTCTCCCCTGAGAATGTTTTTGACTTCTTGAAAGATAATAGAAGAAGAGCCCAGTGGGATGTTCTTTGCAACGGATATCCAGCGGACGAGATTCAACATATCTCAAATGGAACTCTTCCTGGCAACTGTATTTCAATTATTCGGCCATCATTCCCTCCGGAGAACAATAAGCTGATTGTACAAGAAAGTTCTATAGATCCCTTGGGATCTTTGATGGTATATGCTCCTCTAGATGCATCAACACTTAATTTGGCAATAAATGGAGGAGACTCTTCACTATTGCCCTTTCTTCCTTTGGGGTTTACAATATCAGGAGATGGAAGATCAAAAACTGTTGCAGGAGAGTCAGGAGGTTCGTTGCTAACTCTGGCATGCCAAGAATTTGCTTGCAGTACATATGCAATGGGGGAGCTAAACATTGAATCTTCAGTAGCTGCCATGAATACACTTGTAACCTCCACTGTAGAGAAAATTAAAGCTGCTTTGAATTGTTCCAATTTGGATTGA 2088 0.4066 MFKECQNPDENQRRQMGEELGLKPIQIKFWFQNKRIQVKNLSERYKNNALRLEYESLQLENLRMKEALKNLLCSSCGGPSLGDEVRNHHLQKLRLENSRLNQDHERLSKLLENNRWLPLPPSSSYDPSGGSDLNQNIPVHDPHIRAFIESLDQNIPAPTETNDEIFSPLTSPLDEDISTLEQEIPFPFLDLDFGAVSGVSNDDMLHHPTNTTMDSERAFMLETAKSAMEELIRLLRMNEPFWFRSVNDGRFVLQRESYKNIFNKDDELNEPYARIESSKDARIVSMRGTQLVDMFLNSDKWVDLFPTIVQKAHTIEVLESGLLGSRDGALQLVNAEMHILSPLVPTRQFSFIRYCKQVEVGVWAIADVSFDSSKYGVALSRAWRHPSGCMINEMIDGSCMVTWVEHVEVDDKIQTHQLFREIICDNNSYGAERWVLTLERMCERFASAALENIPSCDAGVISIAEGRRSVMKLAHRMVKIFCGNLDMSGNMELPHINSGVMVSVRNNTEPGLPNGIIVTAATSFWLPLSPENVFDFLKDNRRRAQWDVLCNGYPADEIQHISNGTLPGNCISIIRPSFPPENNKLIVQESSIDPLGSLMVYAPLDASTLNLAINGGDSSLLPFLPLGFTISGDGRSKTVAGESGGSLLTLACQEFACSTYAMGELNIESSVAAMNTLVTSTVEKIKAALNCSNLD 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1881g00017 695 SUPERFAMILY Bet v1-like 214 446 - -
Gabi1881g00017 695 Gene3D - 1 53 - -
Gabi1881g00017 695 SMART START_1 222 444 IPR002913 GO:0008289
Gabi1881g00017 695 CDD homeodomain 2 40 IPR001356 GO:0003677
Gabi1881g00017 695 ProSiteProfiles START domain profile. 213 447 IPR002913 GO:0008289
Gabi1881g00017 695 ProSiteProfiles 'Homeobox' domain profile. 1 41 IPR001356 GO:0003677
Gabi1881g00017 695 Gene3D - 222 423 IPR023393 -
Gabi1881g00017 695 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 1 690 IPR042160 -
Gabi1881g00017 695 Pfam START domain 224 444 IPR002913 GO:0008289
Gabi1881g00017 695 SUPERFAMILY Homeodomain-like 1 47 IPR009057 -
Gabi1881g00017 695 SUPERFAMILY Bet v1-like 465 633 - -
Gabi1881g00017 695 Coils Coil 47 67 - -
Gabi1881g00017 695 Pfam Homeodomain 1 39 IPR001356 GO:0003677
Gabi1881g00017 695 Coils Coil 90 110 - -
Gabi1881g00017 695 CDD START_ArGLABRA2_like 220 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1881g00017 Gabi-Chr1881 240173 243609 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1881g00017 2 690 Homeobox Transcription Factor Family AT1G73360 41.201 8.65e-172 507
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1881g00017 START 2.5e-31 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1881g00017 K09338 - rcu:8266520 687.952