Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1881g00016 ATGAGTGCTGGAGACAGGCCAAATATGCATGAGCAAACTGGTTGCTTTGATCCCAACACAATGGCAGAAGGTGTCAGCTCTCTAAAAGATAGCTTTCCTCAAACTCTGCCAGAACCATCACCACCACCACTTATGGTTGCAGGCAACAACACCACAAACAGCAATAATAATAGCCTTGAAGAGAATCTCAGGCTTTCTGTGGAGGAGCTGTCCTATCACCACCAGCACCCAGAAGATGTCTCCACATATGAAAATGGAGTCACTGCCACTTCTATAGACATCCCACATCCACAGCATCTGGGTTTGAACATGGGAAACTCCTACTACAACAACAACAACAACATGGATGCCCATTTGGTTCAAGATGTCATTGATGGCTTTCCTTATCAGCAGTCCAATTGGGACCCTAGTGTTCAGGAATTACAAGATATGGACTATGCTAATCACCAAGAAAACCAACCACATGAACAACAATTTCAGCAAATTGAGGCACACAATTGCAGCCAAAGTTACAATCCCTCTTCCCTACTGGATCCTCCTTACCCTTCACCAGATCTCCTAAACCTTCTCCACTTGCCAAGATGCTCAGCTTCATCTTTGCTCACCAATCCCACCATTTGCATCACAAACCCAACTCAGAAAACACCCAATTTTCAGAACTCCATGGGTTTTCTTGGAGACCTTCCAATAGGATCAGACAACACAAGTGCATCCTCAGTTTTGTATGATCCTCTATTTCACTTGAACCTGCCTCCACAGCCTCCAGCCCTCAGAGAGCTTTTTCAGTCTCTCCCCCGTGGCTACAGCTTGCCAACCAGCTCAAGAAATGGTTCTCTTTTTGGTGGAGGGGATGAGATGGAGGGAGATGGGAGCCAGCTTGACATGGGAGTGCTTGAATTCAACAGGGGCACAGCTTCTGTTGGCAAAGGAAGGGAAGGAAAAGCTACCAAACATTTTGCAACTGAGAAACAAAGAAGAGAGCAATTGAATGGAAAATACAAAATCTTAAGGAGTCTTATCCCAAACCCCACCAAGATTGATAGAGCTTCTGTGGTGGGTGATGCCATTGAGTATATAAGAGAGCTGATTAGAACAGTCAATGAGCTCAAATTATTGGTGGAGAAGAAAAGATATGGGAAGGAGAGGTGCAAGAGGCACAAAACTGAAGATGAAGCTGCAGAGAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGGTGCATAAGGACCTCATGGCTCCAGAGAAAATCCAAAGACAGTGAGGTTGATGTCCGGATCATTGATGATGATGTTACAATCAAACTCTTTCAGAGGAAGAAGATTAACTGCCTGCTGTTTGTCTCCAAGGTTCTGTATGAACTTCAGTTGGAACTTCACCATGTTGCAGGTGGACATGTTGGGGAATATTGCAGTTTCTTGTTCAACAGCAAGATAATTGAAGGTTCTTCAGTCTATGCAAGTGCTATTGCCAACAGGGTGATTGATGTTCTGGACAGTCAGTATGCAGCAGCAGTTCCACATACAAGTAGCTATTAG 1536 0.4453 MSAGDRPNMHEQTGCFDPNTMAEGVSSLKDSFPQTLPEPSPPPLMVAGNNTTNSNNNSLEENLRLSVEELSYHHQHPEDVSTYENGVTATSIDIPHPQHLGLNMGNSYYNNNNNMDAHLVQDVIDGFPYQQSNWDPSVQELQDMDYANHQENQPHEQQFQQIEAHNCSQSYNPSSLLDPPYPSPDLLNLLHLPRCSASSLLTNPTICITNPTQKTPNFQNSMGFLGDLPIGSDNTSASSVLYDPLFHLNLPPQPPALRELFQSLPRGYSLPTSSRNGSLFGGGDEMEGDGSQLDMGVLEFNRGTASVGKGREGKATKHFATEKQRREQLNGKYKILRSLIPNPTKIDRASVVGDAIEYIRELIRTVNELKLLVEKKRYGKERCKRHKTEDEAAESCNIKPFGDPDGCIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKINCLLFVSKVLYELQLELHHVAGGHVGEYCSFLFNSKIIEGSSVYASAIANRVIDVLDSQYAAAVPHTSSY 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1881g00016 511 MobiDBLite consensus disorder prediction 305 324 - -
Gabi1881g00016 511 CDD bHLH_AtMYC1_like 318 382 IPR045896 -
Gabi1881g00016 511 Gene3D - 308 377 IPR036638 GO:0046983
Gabi1881g00016 511 PANTHER TRANSCRIPTION FACTOR BHLH91 8 504 IPR045895 GO:0006355|GO:0048658
Gabi1881g00016 511 SMART finulus 319 368 IPR011598 GO:0046983
Gabi1881g00016 511 Pfam Helix-loop-helix DNA-binding domain 316 362 IPR011598 GO:0046983
Gabi1881g00016 511 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 313 362 IPR011598 GO:0046983
Gabi1881g00016 511 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 311 375 IPR036638 GO:0046983
Gabi1881g00016 511 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1881g00016 Gabi-Chr1881 218678 220414 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1881g00016 14 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 38.418 1.85e-90 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi1881g00016 HLH 6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1881g00016 - - gmx:100782512 804.283