Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1881g00004 ATGGCTTCTCAAAAGAGAGGTGGTGGTGGGTCTGGTGATAAGCAAGATGCTCACAACTCAGCCAAAAAGAACTTCCATCGTCATTCTCCCAATCAGATAGCTAAACTTGAAGCAATATTCGAGGAATGCCCACTCCCAGACGAAAACCTGCAACGTCAAATAGGCGAGCAGCTTGGCCTTAACCAAATACAAGTGAAATTTTGGTTTCAAAATAAGAGGACAAAAGCGAAGAATCAAAGTGAGCGATATGATAACAATGCTCTTCGGCTTGAGAATGCAAATTTACAATCAGAGAACTTCAGATTGAAAGAGACTTTGAAAAATGTACTTTGCTCATCTTGTGGGGGTCCATCCTTTGGGCAGGAACAACGCCAATATCGTTTGCAAAAGTTAAGGTTAGAAAATTCAAGATTAAATCAAGAGCATGAGACATTATCCAAACTTTTGGAAAACAATAGATGGCTACCTCTTCCACCTTCATCTTCATATGATCCCTCCGGAGGAAGTGATCTGAATCAAAACATTCCTGTTCATGATCCGCACATTCGTGCCTTTATTGAGTCACTTAATCAAAACATTCCAGCTCCTACTCAAACGAATGATCAAATAATTTCGCCTCTTGCTTCTGCTATTGATGAAGATATTTCAACACTCGAGCAGGAAATTCCTCTTCCCTTTCTTGATCTAGATTTTGGTGCAGTTAGTGGAGTTTCTAACGATGATATGTTGCATCATCCAACGAACACAAATATGGACATAGAGAGGGCATTAATGGTGGAGACCGCAAAAAGTGCCATGGAAGAATTAATAAGACTTTTGCGTATGAATGAACCATTTTGGTTAAGATCTGTGATTGATGGAAAATTCGTTCTTCAACAAGAAAATTACAAAAATATCTTTCACAAAGATATTCAACTAAATGAACCTCATGCTCGGATAGAATCCTCAAAAGATGCACGGATAGTGAGCATGAGAGGGACGCAGTTGGTTGATATGTTTTTGAATTCGGACAAATGGGTTGATCTTTTCCCAACAATTGTTCAAAAAGCACATACAATTGAAGTACTTGAAAGCGGTTTGTTGGGAAGCCGAGATGGAGCATTGCAATTGATGCATGCAGAAATGCACATCCTTTCACCATTGGTTCCAACTCGACAATTCTCCTTCCTTCGTTATTGTAAACAAGTTCAAGTCGGTGTATGGGCGATAGCCGATGTGTCATTTGATTCCTCCAAATACGGCGTCGCTTTTTCTAACGCTTGGAGACACCCCTCTGGATGCATGATTAACGAAATGATCGATGGGTCCTGCATGGTTACTTGGGTTGAACATGTGGAAGTGGATGATAAGATCCAAACTCACCAGCTTTTCAGAGAAATTATTTGTGACAATAATTCATACGGAGCTGAAAGATGGGTTTTAACACTTGAAAGAATGTGTGAGAGATTTGCAAGTGCCTCACTTGCAAATATACCTAGTTGTGACGCTGGAGACATGCCAGGTAACATGGAATTGCCACATATAAATAGTGGGGTTATGGTATCTGTTCGGAATAACACAGAGCCAGGTTTGCCAAACGGCATCATTGTCACTGCTGCTACCTCCTTTTGGCTTCCTTTCTCCCCTGAGAATGTCTTTGACTTCTTGAAAGACAATAGAAGAAGAGCTCAGTGGGATGTTCTTTGCAACGGATATCCAGTGGACGAGATTCAACATATCTCAAATGGAACTCTTCCTGGCAACTGTACTTCAATTATTCGGCCATCAGTCCCTTGGGAGAACAATAAGTTGATTCTACAAGAAAGTTGTATAGATCCCTTGGGATCTTTGATGGTATATGCTCCAATAGATGCAGAAACCCTTAATTTCGCAATGAATGGAGGAGACTCTACACTATTGCCTATTCTTCCATTCGGGTTTACAATATCAGGAGATGGAAGATCAAAAACTGTTGGAGGAGAGTCAGGAGGTTCGTTGCTAACTCTTGTTAACCAAGAACTTTCTTGCAGTACATCTGCAATGGGGGAGCTAAACATTGAATCTTCAGTAGCTGCTATGAATACACTTATAACATCCACTGTGGAGAAAATTAGATTTGCTTTGAATTGTTCCAATTTTGATTAA 2124 0.403 MASQKRGGGGSGDKQDAHNSAKKNFHRHSPNQIAKLEAIFEECPLPDENLQRQIGEQLGLNQIQVKFWFQNKRTKAKNQSERYDNNALRLENANLQSENFRLKETLKNVLCSSCGGPSFGQEQRQYRLQKLRLENSRLNQEHETLSKLLENNRWLPLPPSSSYDPSGGSDLNQNIPVHDPHIRAFIESLNQNIPAPTQTNDQIISPLASAIDEDISTLEQEIPLPFLDLDFGAVSGVSNDDMLHHPTNTNMDIERALMVETAKSAMEELIRLLRMNEPFWLRSVIDGKFVLQQENYKNIFHKDIQLNEPHARIESSKDARIVSMRGTQLVDMFLNSDKWVDLFPTIVQKAHTIEVLESGLLGSRDGALQLMHAEMHILSPLVPTRQFSFLRYCKQVQVGVWAIADVSFDSSKYGVAFSNAWRHPSGCMINEMIDGSCMVTWVEHVEVDDKIQTHQLFREIICDNNSYGAERWVLTLERMCERFASASLANIPSCDAGDMPGNMELPHINSGVMVSVRNNTEPGLPNGIIVTAATSFWLPFSPENVFDFLKDNRRRAQWDVLCNGYPVDEIQHISNGTLPGNCTSIIRPSVPWENNKLILQESCIDPLGSLMVYAPIDAETLNFAMNGGDSTLLPILPFGFTISGDGRSKTVGGESGGSLLTLVNQELSCSTSAMGELNIESSVAAMNTLITSTVEKIRFALNCSNFD 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1881g00004 707 CDD START_ArGLABRA2_like 255 481 - -
Gabi1881g00004 707 SUPERFAMILY Homeodomain-like 16 84 IPR009057 -
Gabi1881g00004 707 Pfam Homeodomain 26 78 IPR001356 GO:0003677
Gabi1881g00004 707 SMART HOX_1 21 83 IPR001356 GO:0003677
Gabi1881g00004 707 MobiDBLite consensus disorder prediction 1 29 - -
Gabi1881g00004 707 Coils Coil 128 148 - -
Gabi1881g00004 707 Gene3D - 10 92 - -
Gabi1881g00004 707 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 702 IPR042160 -
Gabi1881g00004 707 SUPERFAMILY Bet v1-like 252 484 - -
Gabi1881g00004 707 SUPERFAMILY Bet v1-like 510 664 - -
Gabi1881g00004 707 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Gabi1881g00004 707 FunFam Homeobox-leucine zipper protein HDG1 9 95 - -
Gabi1881g00004 707 Gene3D - 288 461 IPR023393 -
Gabi1881g00004 707 CDD homeodomain 22 80 IPR001356 GO:0003677
Gabi1881g00004 707 ProSiteProfiles START domain profile. 251 485 IPR002913 GO:0008289
Gabi1881g00004 707 Pfam START domain 262 482 IPR002913 GO:0008289
Gabi1881g00004 707 SMART START_1 260 482 IPR002913 GO:0008289
Gabi1881g00004 707 Coils Coil 73 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1881g00004 Gabi-Chr1881 114230 119252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1881g00004 22 702 Homeobox Transcription Factor Family AT1G73360 39.481 8.72e-165 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gabi1881g00004 START 1.8e-30 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1881g00004 K09338 - rcu:8266520 669.077