Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1880g00009 ATGGACGGCGCTGAACCTGATATAAAAAGGCACCCCCAGGAAGTTGATGCAGAAAATGAATGTCCAATATCACCTGGAGTAGTGATTGATATGGGACAGGAGAGTCAGTGCACCAAGGATTCCTTTGCTACAGACAGTAAAAAGGTCATTGACACTGAGAATGAGTGTACAAGCCAAAATGTTTGTCAAATTGACCGTAGTCAGGCGGAAATTAATGATGAATGCCAGACCTCAAATATTTCCCATATTGACAAATTTCATATTGATGTTGGTAGTGGACAGCCATGTCAGAACCACAACATTACCTCTGTTGATATATCAATGAACAATACTGATGTAAAATATGAGGAGGAAATATATGTGGCACCAAATATTGGCATGGAATATGAATCAGAAGACCATGCTTACAAGTGCTATAGCAAGTATGCTGTTTTGAAAGGTTTCAGCATAAGAAAGGATTTTGTCAACAAAAGTAGGATAGATGGTGCAGTGGTGTCCAGAAGATACACCTGCTATAGACAGGGTTATCGTCCTAACAAAAATACCACAAACCTAAGGAAATTCCAGCAGGAAACTAGGACTGGCTGCTTGGCACATATGACTATTGCTCGTCAGCCAAATGGCAAGTTTCGTGTCACTCATTTTGAAACAGAGCATAATCATGAGTTTGTAACACCCTGTACTGCTCATATGTTGCCATCACAGAAAAGATTGAGTTTTGTTCAAGCAGTTGAAGCAAACATAACTGAGTCTGGGTTGGATGGGGTGCCAAAACTGGGAATGGGATTTGACTCAGAGGAGCATGCTTATGAATTTTATAATATGTATGCTGGCCGTGTAGGTTTCAGTGTACGAAAAGATTATGTAAATAGGAGTAAAGTTGATGGTGCTATAGCATCTAGAAGGTTTACTTGCTTCAGAGAAGGTTTTCGGCAGAAAGACAAGCGGGACATGAATGTAAAGAGACCTCGGAAGGAAACTAGAATTGGATGTTTAGCACAACTGGTAATTTCTCGTCAACCTGATGGTATGTATCATGTAACTCACTTTGAAGAAAAACATAATCATGAGCTTGTTGCTGCATGTAGAGTTCATATGTTAAGATCGCAAAAGAGATTAGCTGCAACTCAAGTTGAAAACAACTCTGTAGATGGATCCAATGTGCTGCCGAAGTTGGCCTCTGAATCTTATTGCAAGACTACTGAAGGTTTTGATGATCTGGATTATGATCCCATAGGTTATGAATGTAAACTACCTTTCAAATGTACCAGAGAAATAAAGGAGGGAGAAATTGAGAAGATTAGGCATCACTTTCAAAGCAAGCAATCAAAGAATCCTTCTTTCTTTTATGCTTTCCAGCTTGATGCTGATGATCAAATAACAAATATATTTTGGGCTGATGCAAAGATGATAGTAGACTACAGTGATTTTGGCGATGTTGTTTGTTTTGATAGTAGTTATAAGTTTTATAAGGGCTCCCGCCCATTTGCACCATTCCTTGGCATAAATAATCACAAGCAAATGATTATCTTTGGGGCTGCTCTTCTATATAATGAATCTGTGGAATCTTTGAAGTGGCTGTTTCGAGTTTTCATTGAGGCAATGTCTGGAAGGAAGCCAAAGACAATCCTTACAGATCAAGATGCAATAACAGCTGAAGCAATCAATTCCATATTACCTCAAACAAATCACCGAGTTTGTGTATGGCATGTCTACCAAGAAACCCTCAAGCAACTAAGTCATTTGTCTGTTGGATCTGGTTCTTTACTAAATGATTTGAGCAGCTGTTTTTTTTATCATGAGGAGGAGGAGGATTTTGTTAATGCATGGAATGCTCTCCTGGACATGTATGATCTGTGGGAAAATGAATGGTTGCGTCAAATATATGAAAGCAGAGATCAATGGGCCATAGCTTACAGGAGACATATTTTTTGCGCAGACATGGCAAGCATGCTACTGAGAGAAAATCTTACTGGCAACCTCAAAAAGCACCTAAAGAATGACTCAGATGTTCTTCCATTTTTTAAACATCTTGGGAAGGTGTTGACTGATTGGCACTACAAGGAATTAGAAGCAAACTATGACATGAGCCAACGCATGCCAGCCCTAATGGGGGATATCATTACGTTAAAGCATGTAAGAGATCCATACACACCAAAGATATTTGAATTATTCCAGAAAGAATATGAAGCATGTTTAAATCTTGTGGTAAAGCATTGCACTGAGAGAGGATCATTGTATAGTTATACAATTAGCGTATATGAACAAATACGAGAGTATTCGGTTACTTTTGATTCATCTAATGGGACAATCAGTTGCTGCTGTATGAAATTTGAATATATGGGAGTCATATGTAGCCATGTATTAAAAGTTCTTGATTATAGGAACATAAGGATACTTCCATCCCTGTACATTTTAAAGAGATGGACAAAAGATGCTAGAGTTTGA 2448 0.3852 MDGAEPDIKRHPQEVDAENECPISPGVVIDMGQESQCTKDSFATDSKKVIDTENECTSQNVCQIDRSQAEINDECQTSNISHIDKFHIDVGSGQPCQNHNITSVDISMNNTDVKYEEEIYVAPNIGMEYESEDHAYKCYSKYAVLKGFSIRKDFVNKSRIDGAVVSRRYTCYRQGYRPNKNTTNLRKFQQETRTGCLAHMTIARQPNGKFRVTHFETEHNHEFVTPCTAHMLPSQKRLSFVQAVEANITESGLDGVPKLGMGFDSEEHAYEFYNMYAGRVGFSVRKDYVNRSKVDGAIASRRFTCFREGFRQKDKRDMNVKRPRKETRIGCLAQLVISRQPDGMYHVTHFEEKHNHELVAACRVHMLRSQKRLAATQVENNSVDGSNVLPKLASESYCKTTEGFDDLDYDPIGYECKLPFKCTREIKEGEIEKIRHHFQSKQSKNPSFFYAFQLDADDQITNIFWADAKMIVDYSDFGDVVCFDSSYKFYKGSRPFAPFLGINNHKQMIIFGAALLYNESVESLKWLFRVFIEAMSGRKPKTILTDQDAITAEAINSILPQTNHRVCVWHVYQETLKQLSHLSVGSGSLLNDLSSCFFYHEEEEDFVNAWNALLDMYDLWENEWLRQIYESRDQWAIAYRRHIFCADMASMLLRENLTGNLKKHLKNDSDVLPFFKHLGKVLTDWHYKELEANYDMSQRMPALMGDIITLKHVRDPYTPKIFELFQKEYEACLNLVVKHCTERGSLYSYTISVYEQIREYSVTFDSSNGTISCCCMKFEYMGVICSHVLKVLDYRNIRILPSLYILKRWTKDARV 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1880g00009 815 MobiDBLite consensus disorder prediction 1 21 - -
Gabi1880g00009 815 ProSiteProfiles Zinc finger SWIM-type profile. 760 796 IPR007527 GO:0008270
Gabi1880g00009 815 MobiDBLite consensus disorder prediction 1 17 - -
Gabi1880g00009 815 Pfam FAR1 DNA-binding domain 139 224 IPR004330 -
Gabi1880g00009 815 Pfam FAR1 DNA-binding domain 271 359 IPR004330 -
Gabi1880g00009 815 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 118 241 IPR031052 GO:0006355
Gabi1880g00009 815 SMART 26again6 771 798 IPR006564 GO:0008270
Gabi1880g00009 815 Pfam SWIM zinc finger 762 795 IPR007527 GO:0008270
Gabi1880g00009 815 Pfam MULE transposase domain 480 573 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1880g00009 Gabi-Chr1880 199119 205284 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Gabi1880g00009 MULE 7e-22 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1880g00009 K17604 - gmx:102659753 1355.12