Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1880g00004 ATGGCCTCTTCTAGCTACTCTAATTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGTATGCCAGATTGCATTTTTGCCCCATATTTTCCACCAGAAGAACCACAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGTAAACTTCTCAATGAAGTCCAACCCCATCAAAGAGAGGATGCAGTGAACTCTTTAGCCTATGAAGCCGAGGCACGGATAAAAGATCCAGTTTATGGTTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTTGATGCCACAAATGCTGATTTGATTCGCTATACTTGCAATGAAATACCAAATCAAGATGGTAGAAGGATGGGAGAAGGAGGTGGTTCCTCTCTTGGTCAATCTCCTGGTTTTTATTATCCTTCTCCTTGGAACAATGATCCTTCTGGGGATGGTTATCAAAGAGGAGGTGACAACAATATGTGA 492 0.4289 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEIPNQDGRRMGEGGGSSLGQSPGFYYPSPWNNDPSGDGYQRGGDNNM 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1880g00004 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 120 - -
Gabi1880g00004 163 Coils Coil 89 109 - -
Gabi1880g00004 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Gabi1880g00004 163 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Gabi1880g00004 163 MobiDBLite consensus disorder prediction 119 163 - -
Gabi1880g00004 163 MobiDBLite consensus disorder prediction 137 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1880g00004 Gabi-Chr1880 59422 61077 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1880g00004 4 113 AS2 family AT3G27650 85.455 7.73e-70 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Gabi1880g00004 LOB 8.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1880g00004 - - gmx:100306630 308.916