Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1880g00002 ATGTATTCGAAGTACGATTTCATAAAGGATCTTAATCCTACAAAAGAAGACTGGAGGATTAAATTGCGCGTGGTTAGGTGTTGGAAGGTTCCCAGTCTTAATCCAAAAGATTTTGATGACAATGTTGACATGGTTTTGTTAGATGAACAAGTTAGAAGGATCCATGCTACGGCGAAGGACATTATTGGTTTGCTGTCTGGAATTGGGGAAGTCCGTGAACATGTCATCTCTGGTAGGATAACAAGAATGGTTGTTGTGGAGCTTGACAATCTGAGGCTTTCGGGTGATCCGATCGAAAGTAGTCAGAGGTTGACTCAGTTGTCCAGCCAATCCTCATATTCTTTTGAAAATGATTTTCTAAAAGATATAGAAAGGAAATTTATTACTGATATTAAGAATTGCAGTGATGTTACTACATGCATTACTTATGGAAGTATTAAATCCATCGAAAGTAAGTACAATTGGTGGTACAAGTTCTGTAAGAAATGTCCATATTCAGTGTGTGAAGATTTTGAGAAATTGTATTGTAAGAACTGTCAGAAACATTGGGATGAATATTATCCGAAGTTCAGTGTTCAGGTCAGAGTTGTTGATAACAGCGATTCTGCTTCTTTTGTACTGTTTGATAGAGATTGTCTTGCTTTGTTAGGAGTGAGTGCTGGTGAATTACGCGAGCAACATTTCAAGCGGGGTGCGGATTTGGAGCATTATCCGGAAGAGTTGAACGTTGTGAAAGATAGATCCATGTTATTTAAAGTGAATGTGAAAATAAGCAATTTGAACGCCTACAGGGAGCCAAAATATCATGTGGCCAAAGTTTGCATCATTGAAAGTATTATCACATCATTTCTAAAGACCACAGCAGATCCAAATGATGATTCTGTATTTGACAGTGCTTATGATGACAATATTGTATCGATAGGGTCAGCAAAAGCAATGGATGTTCAGAGCCAAACCTGTGAGAGTACTGGTGATGCTGATATTTCTCTGTCGACACCTTCTGTAAAGTATAGTGATGTTGTTGAAGACAAAAATAATTGTTCAGTTGTCCGTCCTCTTAAAAAGATTAAGTTGGAGAAAGATTTTGATGCTGAAGCTGGTGACACCTTACAGCAGACAGAAAATTTGTAA 1131 0.3775 MYSKYDFIKDLNPTKEDWRIKLRVVRCWKVPSLNPKDFDDNVDMVLLDEQVRRIHATAKDIIGLLSGIGEVREHVISGRITRMVVVELDNLRLSGDPIESSQRLTQLSSQSSYSFENDFLKDIERKFITDIKNCSDVTTCITYGSIKSIESKYNWWYKFCKKCPYSVCEDFEKLYCKNCQKHWDEYYPKFSVQVRVVDNSDSASFVLFDRDCLALLGVSAGELREQHFKRGADLEHYPEELNVVKDRSMLFKVNVKISNLNAYREPKYHVAKVCIIESIITSFLKTTADPNDDSVFDSAYDDNIVSIGSAKAMDVQSQTCESTGDADISLSTPSVKYSDVVEDKNNCSVVRPLKKIKLEKDFDAEAGDTLQQTENL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1880g00002 376 CDD RPA1_DBD_C 140 273 IPR047192 -
Gabi1880g00002 376 Gene3D - 4 64 IPR012340 -
Gabi1880g00002 376 Pfam Replication factor-A C terminal domain 142 273 IPR013955 -
Gabi1880g00002 376 SUPERFAMILY Nucleic acid-binding proteins 124 275 IPR012340 -
Gabi1880g00002 376 PANTHER OS03G0429900 PROTEIN 145 281 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1880g00002 376 Gene3D - 105 280 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1880g00002 Gabi-Chr1880 47100 52075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1880g00002 142 277 Core DNA Replication Machinery Family AT5G61000 26.277 3.17e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1880g00002 - - ahf:112718260 145.206