LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1879g00002	ATGTTAATGCTTATGCATCTCTTTGCCTTCCTAATCCAAACTCAAACTAGTACAAGCACTGTGATTGACCCCAATACTTTTTCCTTTATTTCATTCAGCCCTGAAAGTTGCACTAATGGTGAACTTCTCTGTATGGGATCAGCCACTTCTGGCAATGGGTATTTAAGTCTCACACCAGAGCCACAACCACAACAAAATAACAATTCCAGTTTACCATCATCTTCAACAACCAACAAAATAGGTAGGGTTCTGTACCCTCATCCTGTACATGTTTGGCCAGCAATTATCTCTACCACCTTCACTCTTAGGATCACTCCCTTTACGAAGAATTCAACCAGCTCTGGTGATGGAATGGCACTAGTGTTTGCACAAGATAATAGGCCCTCACCAAATCATAGCTATGGCTCATATCTTGGCCTGTTTGATAAATCTACACAAGGTGGGGTGTTTCGACAAATAGCTGTGGAGATGGACACTTTCATGAATGAATTTGATCCAGATGGAAACCACATTGGGATAGTCACAACAAGCATCACAAATCCAGTTGCTTTTCAGAGTCTAAATAGCACTGGCGTTGACCTCAAAAGTGGAAGAGACATTGTGTTCAAAATTGACTATGATGGGTGGAATAACATGATTTTTGTCTCAGTTGGATACTCTAGAAACCAATTAAAGAGTGTTATGAACCATTCAATCACCTTACCTGATATAATTCCAAGCACAGTTTATGTAGGTTTCACAGCCTCCACTGGCATGACTATTCCTGAAACCCATCAAGTCCTCAATTGGGTTTTCACATCAGTGCCACTACCTATTCTTTCTGTTGAACCTAGAAAAGTTGACACCTTTAAGATCATATTGATAATTGTCATACCAGTTTTTGTGTTAATTAGCTTATTTCCTTTTATGTGGAAAGCTTGGAAGAAAATATATGAGAGGGGTCATAAGGAGGAGGATATAGAAAGCATATCAAGGACAGTTGCATATATCCCTAAGATGTTCACTTACAAGCAACTGTTAAAGGCCACATGCAACTTCAGCAAAGAAAATCTTTTGGGCAGAGGTGGATTTGGTGGTGTTTATAAAGGCATCATATTAGACACTGGAAAAACTATAGCAGTAAAGAAGATTTCAGCAAACTCTAAACAAGGTGAAAAAGAGTTCTTAGCTGAAATATGTACCATAGGGCGTCTTAGGCACAAAAACTTAGTGCAGCTCCAAGGCTGGTGCAATGAAGGTAAGAATCTTCTCTTGGTTTATGATTATATGCAAAATGGAAGCCTTGACCACTTCATAGGCAAGGATGTTCTGGACTGGAAAACCAGACACAAGATATTAACAGGATTGGCATCAGCATTGCTTTATCTTCATGAGGAGTGTGGAAACCCTGTTGTTCACAGAGATGTTAAGCCTAACAATGTAATGCTGGATTCTGATTTCAATGCTCATTTAGGCGATTTCGGGTTAGCAAGATTACTCAAAAATGAAGATTCAGTAACCACAAATTTTGCTGGAACTCCAGGGTATTTGGCACCTGAAATAGGCTTTACAGGAAAAGCAAGTCCTGAATCAGATGTGTATAGTTTTGGCATGGTTGTGCTTGAAGTCATATGTGGTAAAAGGTCAAGATGGGTTATGGAAGAGAACAGTTTGGTAGATTGTGTGTGGAATTTGCATGGTGAAAATGCATTGCTTGAGTGTGTTGACAAGCTATTGGAAAACCAATTTGATGAGGAACAAGCTAAAAGGGCATTGATGGTTGGACTTGCATGTTTGCATCCTGATTCACTCTTTAGGCCAAAGATGAGAAAAGTGGTGCACATTTTTTTGAACTCAAATGAACCTTTAATGGAATTACCAAGAATGAGACCCACTGGAGTTTATGTAACAGTTTCTTCACGTACTTCAATTACAGATTTTGGCTCTAGAGGTGAGTTAAGAAGGCTTCAATCATCAACAACATCATTGGATGAAACTTGTATTGTGGATGAAGTATAA	1998	0.3909	MLMLMHLFAFLIQTQTSTSTVIDPNTFSFISFSPESCTNGELLCMGSATSGNGYLSLTPEPQPQQNNNSSLPSSSTTNKIGRVLYPHPVHVWPAIISTTFTLRITPFTKNSTSSGDGMALVFAQDNRPSPNHSYGSYLGLFDKSTQGGVFRQIAVEMDTFMNEFDPDGNHIGIVTTSITNPVAFQSLNSTGVDLKSGRDIVFKIDYDGWNNMIFVSVGYSRNQLKSVMNHSITLPDIIPSTVYVGFTASTGMTIPETHQVLNWVFTSVPLPILSVEPRKVDTFKIILIIVIPVFVLISLFPFMWKAWKKIYERGHKEEDIESISRTVAYIPKMFTYKQLLKATCNFSKENLLGRGGFGGVYKGIILDTGKTIAVKKISANSKQGEKEFLAEICTIGRLRHKNLVQLQGWCNEGKNLLLVYDYMQNGSLDHFIGKDVLDWKTRHKILTGLASALLYLHEECGNPVVHRDVKPNNVMLDSDFNAHLGDFGLARLLKNEDSVTTNFAGTPGYLAPEIGFTGKASPESDVYSFGMVVLEVICGKRSRWVMEENSLVDCVWNLHGENALLECVDKLLENQFDEEQAKRALMVGLACLHPDSLFRPKMRKVVHIFLNSNEPLMELPRMRPTGVYVTVSSRTSITDFGSRGELRRLQSSTTSLDETCIVDEV	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1879g00002	665	FunFam	Putative L-type lectin-domain containing receptor kinase S.7	23	279	-	-
	Gabi1879g00002	665	ProSitePatterns	Protein kinases ATP-binding region signature.	352	376	IPR017441	GO:0005524
	Gabi1879g00002	665	SMART	serkin_6	346	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1879g00002	665	PANTHER	-	67	614	-	-
	Gabi1879g00002	665	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	464	476	IPR008271	GO:0004672\|GO:0006468
	Gabi1879g00002	665	FunFam	probable L-type lectin-domain containing receptor kinase S.5	331	422	-	-
	Gabi1879g00002	665	Pfam	Legume lectin domain	26	268	IPR001220	GO:0030246
	Gabi1879g00002	665	Gene3D	Transferase(Phosphotransferase) domain 1	423	617	-	-
	Gabi1879g00002	665	Gene3D	-	23	274	-	-
	Gabi1879g00002	665	CDD	STKc_IRAK	352	609	-	-
	Gabi1879g00002	665	Pfam	Protein kinase domain	347	607	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1879g00002	665	SUPERFAMILY	Concanavalin A-like lectins/glucanases	30	268	IPR013320	-
	Gabi1879g00002	665	SUPERFAMILY	Protein kinase-like (PK-like)	330	627	IPR011009	-
	Gabi1879g00002	665	ProSiteProfiles	Protein kinase domain profile.	346	610	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Gabi1879g00002	665	Gene3D	Phosphorylase Kinase; domain 1	331	422	-	-
	Gabi1879g00002	665	FunFam	probable L-type lectin-domain containing receptor kinase S.5	423	617	-	-
	Gabi1879g00002	665	MobiDBLite	consensus disorder prediction	54	76	-	-
	Gabi1879g00002	665	CDD	lectin_legume_LecRK_Arcelin_ConA	27	267	IPR001220	GO:0030246

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1879g00002	Gabi-Chr1879	16784	20645	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1879g00002	30	645	Receptor kinase-like Gene Family	AT5G55830	38.748	1.68e-125	385

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Gabi1879g00002		Pkinase	7.2e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1879g00002	-		-	ccaj:109810929	963.755