Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1878g00013 ATGAGTACTGAGGAAATGCCTGTGAGTGAGGAACATGATGCGGCTTCTTGTAGAAGAACAGTTTCTCTTCCAGTTCACAAGGTTGATGATCCAATGGGGATAACTGAAGAAACCACACATGTTCCTCCTCGGAAGCGACAGAATCTTCTCCTAGAAATACCGTCAAGAACACCAGACGAGTGTTCCAAAGATTTTGTTGCAGTTAAAATGCCACTGACACCAAGTCCCACTCCCACACCCAAGAGAGTGAATTTTCTTGTGAGTTCTCGCTCTGTAGATGCTCCAACAAATAATTCTCCGGGGCCTTCAACATCAAAAGGCAAATCATCTATAAGAAACCTCCTACCAAAATTGAGTTTCAGGTATCGAACACCATTAGATATTGAAAAGTCTACTAGTGGAGCTCCAGAAATTTCCTCTTCAGGCCATCGAGAAAAGCCTTCAATCTCAAGATCATTGTCCCTTAGTAAGATATTTACTCCTAGGATTAAGAGAATGTCATCATTACCAGAAGAAGAAATTGGACATTCAAACCCAGAATCTGCTCATGCCGGAAGTGTTGGTGGTCCTCCAAATAAAAGAGAGGCCCAGAAGAAGATAGCTCGCTCTCTTTCAGTGCCTGTCAACAGCAAAGAAAAAAGCATAAGGAGGATGGATTCATTTTTCCGTGTTGTTCCTTCTACTCCTCGAGTAAAGGAAGGAAATGAATTGTTGACCACTTCTCCAACAAAGGATACTGAAAATGACGGTTCTAATGGTGAAGACATACCTGAAGAAGAGGCAGTATGTAGAATCTGTCTGGTTGATCTATGTGAAGGAGGTGAGACCTTCAAGTTGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTATTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGTAAGGAGGATGTTCGGAACCTACCTGTGACACTATTACGGATCCAAAGCATTCGCAGTCGGATTACTGGAGCAAATAGGTTTCAGCAGGAAGATGGAAATGGGTTCAGGATTTGGCAGGAAGTCCCAGTGCTTGTCATTGTCAGCATGCTTGCCTATTTCTGTTTTCTTGAGCAGCTATTGGTTGAAAAAATGGGAACCGGTGCAATTGCCATATCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCATGACATCATCAACCATGGTGAAGAGCAGGTTCATCTGGATTTATGCATCTGTTCAGTTTGCTCTTGTGGTTCTCTTCGCACATATATTTTACTCCGTGGTTCATGTGCAAGCAGTTCTGTCAATTCTTCTTGCAACATTTGCTGGTTTTGGTGTGGTAATGAGTGGAAGTTCTATTCTTGTGGAGTTTTTTAGATGGAGAAGAAGATGGCTGGCTTTATCAGAGCTGCAACATGGCCCTCAACAGATGACACAAGCAGGACAATACCCTCAAACTGTAGACACGCTGCGTTCTGGCCCTCCAAATCCTAGTCAGCCAGTGTTGCAAAATCAACAGAACTCAAATCAGAGCTGA 1536 0.4329 MSTEEMPVSEEHDAASCRRTVSLPVHKVDDPMGITEETTHVPPRKRQNLLLEIPSRTPDECSKDFVAVKMPLTPSPTPTPKRVNFLVSSRSVDAPTNNSPGPSTSKGKSSIRNLLPKLSFRYRTPLDIEKSTSGAPEISSSGHREKPSISRSLSLSKIFTPRIKRMSSLPEEEIGHSNPESAHAGSVGGPPNKREAQKKIARSLSVPVNSKEKSIRRMDSFFRVVPSTPRVKEGNELLTTSPTKDTENDGSNGEDIPEEEAVCRICLVDLCEGGETFKLECSCKGELALAHQECAIKWFSIKGNKTCDVCKEDVRNLPVTLLRIQSIRSRITGANRFQQEDGNGFRIWQEVPVLVIVSMLAYFCFLEQLLVEKMGTGAIAISLPFSCVLGLLSSMTSSTMVKSRFIWIYASVQFALVVLFAHIFYSVVHVQAVLSILLATFAGFGVVMSGSSILVEFFRWRRRWLALSELQHGPQQMTQAGQYPQTVDTLRSGPPNPSQPVLQNQQNSNQS 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1878g00013 511 CDD RING_CH-C4HC3_MARCH 263 311 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 486 511 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 1 47 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 1 17 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 169 209 - -
Gabi1878g00013 511 Pfam RING-variant domain 263 310 IPR011016 GO:0008270
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 233 254 - -
Gabi1878g00013 511 ProSiteProfiles Zinc finger RING-CH-type profile. 255 317 IPR011016 GO:0008270
Gabi1878g00013 511 PANTHER OS02G0165000 PROTEIN 38 478 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 233 247 - -
Gabi1878g00013 511 SMART ringv_2 262 311 IPR011016 GO:0008270
Gabi1878g00013 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 318 IPR013083 -
Gabi1878g00013 511 SUPERFAMILY RING/U-box 259 313 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 133 153 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 71 153 - -
Gabi1878g00013 511 MobiDBLite consensus disorder prediction 79 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1878g00013 Gabi-Chr1878 173550 179226 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1878g00013 257 317 C3H Transcription Factor Family AT2G37950 48.387 5.28e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1878g00013 - - gmx:100815566 817.764