Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1878g00012 ATGGCGGAGCCTCTCAACACTGAACTCTCTTCCTCTAAAACCCTAAGCCCAATCAACGGTCACGATTCCACCTTCGAACCGCATCAAACGGCTCCGCAAGACACTCAAATCCATCATGAAAACGACGACCTCGTTCCGACTGAGAAACGTAAGAGGGAAGACGGTGACGGCGGCGGAGCCGGAGCCGACGCCGACCGTTCGCTCCATCCGCTGTGGAAGACCAGCCTCTGTTCCTACTTCAGGCGCAATGATGACTCCTGCAGCCACGGCGGCGCGTGCCGCTACGCGCACAGCGAGGAGGAGCTCCGCCGTCGACCCGACAACACGTGGGACCCGACTTCCGAGCGAGCGAAGAAGGCGTTGAAATCCGAGGCGGGCGAGAAGTGTGACAATTCGGAGGGTGTGATGATGACTGAGGCCGTCGTCGACGACGATGTTGACGGCAGTGGCTCCAGTCACGCGCTTAGTAAATGCTTAGTGCATTTGCCGAGGAAGTGGAGCTCCGAGAATTTGAGAAAATTTCTCACTGAGGAGGGTATACTTTTTAAGCATGCGAAGAAAAAGAAAGGTATGATGATTGGTTTCGTTAGTTTTGAAGAGGAAGAACAAATGAAGAGTTCATCTAAGGATTTAGAAGGAAAATCAATTGGCAACAAAAGGCTAAAGGTTGCTGATGTCATTCCTCGATCATTTGAAAAGAAAAGTAACTCCGGTACAAGAAGTTTGCGTGATGTAGTGACCCCTCTAGCTCATCTGTCCTATGCTGATCAATTGGAGCAGAAGAAAAGCTCCCTCATGCAGATTCTCAAAAGACTTACTAGAAATGCACGTAAAGCTTGTCCAACTGGGATTTCTCTTCCTGAGTGGATCCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTATAATTGCATCACCAATTGTAAATGGATATCGTAATAAATGTGAATTTTCAGTTGGATATTCTCTGAAAGGCAAAATAACAGTGGGCTTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAATGTTTCTACAGTTGCTTGCAAATATGCTACTATCTTTCAGGAATTTTTGCAACATACTGATTTACCAGTTTGGAACAGATTTAAAAATTCTGGATTTTGGCGTCAATTAACGGTTCGAGAAGGGAGGACAAATGGGAATGTTGTTGATGCTGATACTTTAGGCGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCACAAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGAAGGAGCTACTTCGCATTGTCCAACATTGCCCCTTACAGCTGTGGTTGTTCAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCACCCCTGCGTTTAATTCCCATTCCTAAAGCAGTTGATGATCCTGAGATGGATGAAAGTAATAATGCCATGGATGTAAGAATCCATGATTATATCAGCAATCTCCGGTTCTCTATATCGCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCCGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCTTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCTGTATCTGATGCTCATAGGAATGCGGAGATTAATGGCATAAAAAACTGCAGATTTATATGTGCAAAGGCTGAGGACGTGATGGGATCCTTGTTAAGGGAACACCTAAATGTGCCTAAGGAACAAGTTGATGATCCTAATATCTCTAGTAGTGGCAGCGACATTCCTGAGGGTAGTGGGTGCCCAGAGCCTGAAAATGGTGACATGGCATCTCATTGTTCAGAAAATGACAACACAGAAGTTGGAAGTGAGGTTCCGAAGGGTAGCACTTCCGAAAATGGGAATACTTCCACTCAACATTTTAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCTACTGTGATCAAAGCTTTGAGAACTCATCCACGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAAGCTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCATAAAGATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCATAGGGCCAAGTCTATGCCTATATCAGAGGCCTTCCAACCCATTAAAGCTATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGATAG 2361 0.4549 MAEPLNTELSSSKTLSPINGHDSTFEPHQTAPQDTQIHHENDDLVPTEKRKREDGDGGGAGADADRSLHPLWKTSLCSYFRRNDDSCSHGGACRYAHSEEELRRRPDNTWDPTSERAKKALKSEAGEKCDNSEGVMMTEAVVDDDVDGSGSSHALSKCLVHLPRKWSSENLRKFLTEEGILFKHAKKKKGMMIGFVSFEEEEQMKSSSKDLEGKSIGNKRLKVADVIPRSFEKKSNSGTRSLRDVVTPLAHLSYADQLEQKKSSLMQILKRLTRNARKACPTGISLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLKGKITVGFMLGNFREGVTAVEEAVDCPNVSTVACKYATIFQEFLQHTDLPVWNRFKNSGFWRQLTVREGRTNGNVVDADTLGGIAEVMLIVQVSTASFDDAQVAAEFKRLAQAFVEGATSHCPTLPLTAVVVQDHQGISNVAPADAPLRLIPIPKAVDDPEMDESNNAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICAKAEDVMGSLLREHLNVPKEQVDDPNISSSGSDIPEGSGCPEPENGDMASHCSENDNTEVGSEVPKGSTSENGNTSTQHFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTQHCELVMLLER 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1878g00012 786 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 99 IPR000571 GO:0046872
Gabi1878g00012 786 Gene3D Vaccinia Virus protein VP39 482 785 IPR029063 -
Gabi1878g00012 786 Gene3D - 65 105 - -
Gabi1878g00012 786 SMART c3hfinal6 71 99 IPR000571 GO:0046872
Gabi1878g00012 786 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 247 786 IPR029063 -
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 1 32 - -
Gabi1878g00012 786 Coils Coil 255 275 - -
Gabi1878g00012 786 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 245 786 IPR010280 GO:0006396|GO:0008173
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 1 66 - -
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 610 670 - -
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 97 129 - -
Gabi1878g00012 786 ProSitePatterns RNA methyltransferase trmA family signature 1. 681 713 IPR030390 -
Gabi1878g00012 786 Gene3D - 158 227 IPR012677 -
Gabi1878g00012 786 ProSiteProfiles Zinc finger C3H1-type profile. 71 100 IPR000571 GO:0046872
Gabi1878g00012 786 SUPERFAMILY CCCH zinc finger 69 104 IPR036855 GO:0046872
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 643 670 - -
Gabi1878g00012 786 Pfam tRNA (Uracil-5-)-methyltransferase 673 722 IPR010280 GO:0006396|GO:0008173
Gabi1878g00012 786 Pfam Methyltransferase domain 543 601 IPR025714 -
Gabi1878g00012 786 SUPERFAMILY RNA-binding domain, RBD 161 238 IPR035979 GO:0003676
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 97 131 - -
Gabi1878g00012 786 MobiDBLite consensus disorder prediction 33 60 - -
Gabi1878g00012 786 CDD AdoMet_MTases 545 599 - -
Gabi1878g00012 786 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 89 786 IPR045850 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1878g00012 Gabi-Chr1878 160375 166427 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1878g00012 tRNA_U5-meth_tr 1.7e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1878g00012 K15332 - qsa:O6P43_028361 1147.5