Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1878g00011 ATGGCGGAGCCTCTCAACACTGAACTCTCTTCCTCTAAAACCCTAAGCCCAATCAACGGTCACGATTCCACCTTCGAACCGCATCAAACGGCTCCGCAAGACACTCAAATCCATCATGAAAACGACGACCTCGTTCCGACTGAGAAACGTAAGAGGGAAGACGGTGACGGCGGCGGAGCCGGAGCCGACGCCGACCGTTCGCTCCATCCGCTGTGGAAGACCAGCCTCTGTTCCTACTTCAGGCGCAATGATGACTCCTGCAGCCACGGCGGCGCGTGCCGCTACGCGCACAGCGAGGAGGAGCTCCGCCGTCGACCCGACAACACGTGGGACCCGACTTCCGAGCGAGCGAAGAAGGCGTTGAAATCCGAGGCGGGCGAGAAGTGTGACAATTCGGAGGGTGTGATGATGACTGAGGCCGTCGTCGACGACGATGTTGACGGCAGTGGCTCCAGTCACGCGCTTAGTAAATGCTTAGTGCATTTGCCGAGGAAGTGGAGCTCCGAGAATTTGAGAAAATTTCTCACTGAGGAGGGTATACTTTTTAAGCATGCGAAGAAAAAGAAAGGTATGATGATTGGTTTCGTTAGTTTTGAAGAGGAAGAACAAATGAAGAGTTCATCTAAGGATTTAGAAGGAAAATCAATTGGCAACAAAAGGCTAAAGGTTGCTGATGTCATTCCTCGATCATTTGAAAAGAAAAGTAACTCCGGTGTTGCTTTCCAACAAGAATCCCCACAAAATATTGATACTGCATTAGATAAGGAGAATGAAGGGGTCGATGTTCCTTCAAATGGGGCATTGGATGCTGAAACAAATGATGATAATTTGGCGGTTGATGGTTCCGTGTCAAAGACAAGAAGTTTGCGTGATGTAGTGACCCCTCTAGCTCATCTGTCCTATGCTGATCAATTGGAGCAGAAGAAAAGCTCCCTCATGCAGATTCTCAAAAGACTTACTAGAAATGCACGTAAAGCTTGTCCAACTGGGATTTCTCTTCCTGAGTGGATCCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTATAATTGCATCACCAATTGTAAATGGATATCGTAATAAATGTGAATTTTCAGTTGGATATTCTCTGAAAGGCAAAATAACAGTGGGCTTCATGCTTGGAAACTTCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAATGTTTCTACAGTTGCTTGCAAATATGCTACTATCTTTCAGGAATTTTTGCAACATACTGATTTACCAGTTTGGAACAGATTTAAAAATTCTGGATTTTGGCGTCAATTAACGGTTCGAGAAGGGAGGACAAATGGGAATGTTGTTGATGCTGATACTTTAGGCGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCACAAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGAAGGAGCTACTTCGCATTGTCCAACATTGCCCCTTACAGCTGTGGTTGTTCAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCACCCCTGCGTTTAATTCCCATTCCTAAAGCAGTTGATGATCCTGAGATGGATGAAAGTAATAATGCCATGGATGTAAGAATCCATGATTATATCAGCAATCTCCGGTTCTCTATATCGCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCCGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCTTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCTGTATCTGATGCTCATAGGAATGCGGAGATTAATGGCATAAAAAACTGCAGATTTATATGTGCAAAGGCTGAGGACGTGATGGGATCCTTGTTAAGGGAACACCTAAATGTGCCTAAGGAACAAGTTGATGATCCTAATATCTCTAGTAGTGGCAGCGACATTCCTGAGGGTAGTGGGTGCCCAGAGCCTGAAAATGGTGACATGGCATCTCATTGTTCAGAAAATGACAACACAGAAGTTGGAAGTGAGGTTCCGAAGGGTAGCACTTCCGAAAATGGGAATACTTCCACTCAACATTTTAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCTACTGTGATCAAAGCTTTGAGAACTCATCCACGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAAGCTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCATAAAGATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCATAGGGCCAAGTCTATGCCTATATCAGAGGCCTTCCAACCCATTAAAGCTATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGATAG 2502 0.4524 MAEPLNTELSSSKTLSPINGHDSTFEPHQTAPQDTQIHHENDDLVPTEKRKREDGDGGGAGADADRSLHPLWKTSLCSYFRRNDDSCSHGGACRYAHSEEELRRRPDNTWDPTSERAKKALKSEAGEKCDNSEGVMMTEAVVDDDVDGSGSSHALSKCLVHLPRKWSSENLRKFLTEEGILFKHAKKKKGMMIGFVSFEEEEQMKSSSKDLEGKSIGNKRLKVADVIPRSFEKKSNSGVAFQQESPQNIDTALDKENEGVDVPSNGALDAETNDDNLAVDGSVSKTRSLRDVVTPLAHLSYADQLEQKKSSLMQILKRLTRNARKACPTGISLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLKGKITVGFMLGNFREGVTAVEEAVDCPNVSTVACKYATIFQEFLQHTDLPVWNRFKNSGFWRQLTVREGRTNGNVVDADTLGGIAEVMLIVQVSTASFDDAQVAAEFKRLAQAFVEGATSHCPTLPLTAVVVQDHQGISNVAPADAPLRLIPIPKAVDDPEMDESNNAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICAKAEDVMGSLLREHLNVPKEQVDDPNISSSGSDIPEGSGCPEPENGDMASHCSENDNTEVGSEVPKGSTSENGNTSTQHFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTQHCELVMLLER 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 690 717 - -
Gabi1878g00011 833 Coils Coil 302 322 - -
Gabi1878g00011 833 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 89 833 IPR045850 -
Gabi1878g00011 833 SUPERFAMILY CCCH zinc finger 69 104 IPR036855 GO:0046872
Gabi1878g00011 833 SMART c3hfinal6 71 99 IPR000571 GO:0046872
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 1 32 - -
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 1 66 - -
Gabi1878g00011 833 Gene3D Vaccinia Virus protein VP39 529 832 IPR029063 -
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 97 129 - -
Gabi1878g00011 833 CDD AdoMet_MTases 592 646 - -
Gabi1878g00011 833 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 292 833 IPR010280 GO:0006396|GO:0008173
Gabi1878g00011 833 ProSiteProfiles Zinc finger C3H1-type profile. 71 100 IPR000571 GO:0046872
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 657 717 - -
Gabi1878g00011 833 Gene3D - 158 227 IPR012677 -
Gabi1878g00011 833 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 99 IPR000571 GO:0046872
Gabi1878g00011 833 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 294 833 IPR029063 -
Gabi1878g00011 833 ProSitePatterns RNA methyltransferase trmA family signature 1. 728 760 IPR030390 -
Gabi1878g00011 833 Gene3D - 65 105 - -
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 97 131 - -
Gabi1878g00011 833 Pfam tRNA (Uracil-5-)-methyltransferase 720 769 IPR010280 GO:0006396|GO:0008173
Gabi1878g00011 833 SUPERFAMILY RNA-binding domain, RBD 161 235 IPR035979 GO:0003676
Gabi1878g00011 833 MobiDBLite consensus disorder prediction 33 60 - -
Gabi1878g00011 833 Pfam Methyltransferase domain 590 648 IPR025714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1878g00011 Gabi-Chr1878 160375 166427 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1878g00011 tRNA_U5-meth_tr 1.9e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1878g00011 K15332 - qsa:O6P43_028361 1196.42