Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1878g00010 ATGGCGGAGCCTCTCAACACTGAACTCTCTTCCTCTAAAACCCTAAGCCCAATCAACGGTCACGATTCCACCTTCGAACCGCATCAAACGGCTCCGCAAGACACTCAAATCCATCATGAAAACGACGACCTCGTTCCGACTGAGAAACGTAAGAGGGAAGACGGTGACGGCGGCGGAGCCGGAGCCGACGCCGACCGTTCGCTCCATCCGCTGTGGAAGACCAGCCTCTGTTCCTACTTCAGGCGCAATGATGACTCCTGCAGCCACGGCGGCGCGTGCCGCTACGCGCACAGCGAGGAGGAGCTCCGCCGTCGACCCGACAACACGTGGGACCCGACTTCCGAGCGAGCGAAGAAGGCGTTGAAATCCGAGGCGGGCGAGAAGTGTGACAATTCGGAGGGTGTGATGATGACTGAGGCCGTCGTCGACGACGATGTTGACGGCAGTGGCTCCAGTCACGCGCTTAGTAAATGCTTAGTGCATTTGCCGAGGAAGTGGAGCTCCGAGAATTTGAGAAAATTTCTCACTGAGGAGGGTATACTTTTTAAGCATGCGAAGAAAAAGAAAGGTATGATGATTGGTTTCGTTAGTTTTGAAGAGGAAGAACAAATGAAGAGTTCATCTAAGGATTTAGAAGGAAAATCAATTGGCAACAAAAGGCTAAAGGTTGCTGATGTCATTCCTCGATCATTTGAAAAGAAAAGTAACTCCGGTGTTGCTTTCCAACAAGAATCCCCACAAAATATTGATACTGCATTAGATAAGGAGAATGAAGGGGTCGATGTTCCTTCAAATGGGGCATTGGATGCTGAAACAAATGATGATAATTTGGCGGTTGATGGTTCCGTGTCAAAGACAAGAAGTTTGCGTGATGTAGTGACCCCTCTAGCTCATCTGTCCTATGCTGATCAATTGGAGCAGAAGAAAAGCTCCCTCATGCAGATTCTCAAAAGACTTACTAGAAATGCACGTAAAGCTTGTCCAACTGGGATTTCTCTTCCTGAGTGGATCCTCAAGTCTAGGGAAATAGGTGGTCTTCCATGCAAACTAGAGGGTATAATTGCATCACCAATTGTAAATGGATATCGTAATAAATGTGAATTTTCAGTTGGATATTCTCTGAAAGGCAAAATAACAGTGGGCTTCATGCTTGGAAACTTCAGCAGGGAGGGTGTAACAGCAGTTGAGGAAGCAGTGGACTGCCCAAATGTTTCTACAGTTGCTTGCAAATATGCTACTATCTTTCAGGAATTTTTGCAACATACTGATTTACCAGTTTGGAACAGATTTAAAAATTCTGGATTTTGGCGTCAATTAACGGTTCGAGAAGGGAGGACAAATGGGAATGTTGTTGATGCTGATACTTTAGGCGGTATTGCAGAGGTCATGCTTATTGTGCAGGTTTCTACTGCAAGCTTTGATGATGCACAAGTAGCTGCTGAATTTAAGAGGCTTGCTCAGGCATTTGTTGAAGGAGCTACTTCGCATTGTCCAACATTGCCCCTTACAGCTGTGGTTGTTCAGGATCACCAAGGAATATCCAATGTAGCACCAGCTGATGCACCCCTGCGTTTAATTCCCATTCCTAAAGCAGTTGATGATCCTGAGATGGATGAAAGTAATAATGCCATGGATGTAAGAATCCATGATTATATCAGCAATCTCCGGTTCTCTATATCGCCAACAGCATTTTTTCAGGTTAACACTCTTGCTGCCGAGAAGTTATACTCACTTGCTGGAGATTGGGCATGCTTAGGTCCTGATACATTGCTATTTGATATATGCTGTGGGACAGGAACAATTGGCTTGACATTAGCACATCGAGTTGGTATGGTGATTGGAATTGAAATGAACGCTTCTGCTGTATCTGATGCTCATAGGAATGCGGAGATTAATGGCATAAAAAACTGCAGATTTATATGTGCAAAGGCTGAGGACGTGATGGGATCCTTGTTAAGGGAACACCTAAATGTGCCTAAGGAACAAGTTGATGATCCTAATATCTCTAGTAGTGGCAGCGACATTCCTGAGGGTAGTGGGTGCCCAGAGCCTGAAAATGGTGACATGGCATCTCATTGTTCAGAAAATGACAACACAGAAGTTGGAAGTGAGGTTCCGAAGGGTAGCACTTCCGAAAATGGGAATACTTCCACTCAACATTTTAAAAATGTTGTTGCTATTGTTGATCCTCCACGTGCTGGACTTCATCCTACTGTGATCAAAGCTTTGAGAACTCATCCACGCCTGCGGAGGCTTGTTTACATATCCTGTAATCCTGAAAGCTTGGTGGCAAATGCTATTGAGCTTTGTACGCCATCCCCCATAAAGATTGAGAAAGGAAATAAAGACAACAGAGGATGGAGAAACATGAGCAGTGCTGGTTTAGCACGGCATAGGGCCAAGTCTATGCCTATATCAGAGGCCTTCCAACCCATTAAAGCTATGGCTGTTGATCTTTTTCCACATACTCAACACTGTGAATTGGTTATGCTTCTTGAGAGATAG 2505 0.4527 MAEPLNTELSSSKTLSPINGHDSTFEPHQTAPQDTQIHHENDDLVPTEKRKREDGDGGGAGADADRSLHPLWKTSLCSYFRRNDDSCSHGGACRYAHSEEELRRRPDNTWDPTSERAKKALKSEAGEKCDNSEGVMMTEAVVDDDVDGSGSSHALSKCLVHLPRKWSSENLRKFLTEEGILFKHAKKKKGMMIGFVSFEEEEQMKSSSKDLEGKSIGNKRLKVADVIPRSFEKKSNSGVAFQQESPQNIDTALDKENEGVDVPSNGALDAETNDDNLAVDGSVSKTRSLRDVVTPLAHLSYADQLEQKKSSLMQILKRLTRNARKACPTGISLPEWILKSREIGGLPCKLEGIIASPIVNGYRNKCEFSVGYSLKGKITVGFMLGNFSREGVTAVEEAVDCPNVSTVACKYATIFQEFLQHTDLPVWNRFKNSGFWRQLTVREGRTNGNVVDADTLGGIAEVMLIVQVSTASFDDAQVAAEFKRLAQAFVEGATSHCPTLPLTAVVVQDHQGISNVAPADAPLRLIPIPKAVDDPEMDESNNAMDVRIHDYISNLRFSISPTAFFQVNTLAAEKLYSLAGDWACLGPDTLLFDICCGTGTIGLTLAHRVGMVIGIEMNASAVSDAHRNAEINGIKNCRFICAKAEDVMGSLLREHLNVPKEQVDDPNISSSGSDIPEGSGCPEPENGDMASHCSENDNTEVGSEVPKGSTSENGNTSTQHFKNVVAIVDPPRAGLHPTVIKALRTHPRLRRLVYISCNPESLVANAIELCTPSPIKIEKGNKDNRGWRNMSSAGLARHRAKSMPISEAFQPIKAMAVDLFPHTQHCELVMLLER 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1878g00010 834 Coils Coil 302 322 - -
Gabi1878g00010 834 SUPERFAMILY CCCH zinc finger 69 104 IPR036855 GO:0046872
Gabi1878g00010 834 SMART c3hfinal6 71 99 IPR000571 GO:0046872
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 1 32 - -
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 691 718 - -
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 1 66 - -
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 658 718 - -
Gabi1878g00010 834 Gene3D Vaccinia Virus protein VP39 530 833 IPR029063 -
Gabi1878g00010 834 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 72 99 IPR000571 GO:0046872
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 97 129 - -
Gabi1878g00010 834 PANTHER TRNA (URACIL-5-)-METHYLTRANSFERASE 89 834 IPR045850 -
Gabi1878g00010 834 ProSiteProfiles Zinc finger C3H1-type profile. 71 100 IPR000571 GO:0046872
Gabi1878g00010 834 ProSiteProfiles SAM-dependent methyltransferase RNA m(5)U-type domain profile. 292 834 IPR010280 GO:0006396|GO:0008173
Gabi1878g00010 834 Pfam tRNA (Uracil-5-)-methyltransferase 721 770 IPR010280 GO:0006396|GO:0008173
Gabi1878g00010 834 Gene3D - 158 227 IPR012677 -
Gabi1878g00010 834 CDD AdoMet_MTases 593 647 - -
Gabi1878g00010 834 Gene3D - 65 105 - -
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 97 131 - -
Gabi1878g00010 834 SUPERFAMILY RNA-binding domain, RBD 161 235 IPR035979 GO:0003676
Gabi1878g00010 834 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 294 834 IPR029063 -
Gabi1878g00010 834 MobiDBLite consensus disorder prediction 33 60 - -
Gabi1878g00010 834 ProSitePatterns RNA methyltransferase trmA family signature 1. 729 761 IPR030390 -
Gabi1878g00010 834 Pfam Methyltransferase domain 591 649 IPR025714 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1878g00010 Gabi-Chr1878 160375 166427 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gabi1878g00010 tRNA_U5-meth_tr 1.9e-07 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1878g00010 K15332 - qsa:O6P43_028361 1191.79