Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1878g00005 ATGTTCAATAAGACTCTTTCTTTTGCCAAAGCGATGGGGTGCTGTAATTGCTTCGGGTTCATCAGGAGACGGAACAGTCCAATGGCTAAGCCCACCATCAACCATAATCACTCCCAGGAGCTGTTGTTGGATGATGACATTGAAGATGAAGAGCATTCGTATAATGATGAGGGTACTAACACAACTAGTGGAGATGATAGTGAGGTGCAAATTCGTCCCAAGCGGTCGGAAGAAATTTTGAACTTGAGAGTAGACAATGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAAACTCACAAAGTTGTTCGCACAGAGGATGAAAACGGGAACAAGATAATAAATGAGTATATTCGGGAGTATAAGATTGGTTCCGGTAGCTACGGGAAAGTGGCCCTTTATAGAAGCTCTGTCGATGGAAAGCATTATGCAATTAAGGCCTTCCATAAGTCTCATTTACTGAAACTTCGAGTTGCACCCTCAGAAACTGCCATGACTGATGTTCTACGTGAGGTTCTCATTATGAAAATGCTGGAACATCCTAATATAGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCAGATCACTTCTACATGGTACTTGAATATGTGGAAGGCAAATGGGTTTGTGAGGGTACAGGTCCCGCATGTGGCTTAGGTGAAGAGACTGCTAGGAGATACTTGCGTGATATAATTTCTGGATTAACGTATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCTGATAATCTGTTGGTTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGAATGATAATGATGAGCTTCGCCGATCACCGGGCACTCCTGTTTTCACTGCACCAGAATGTATTATAGGTCTTACCTATCATGGTAAAGCTGCAGACACATGGGCGGTAGGAGTTACTTTATACTGTATGATATTGGGTGAATACCCCTTTCTTGGAGACACACTACAAGATACATATGACAGAATAGTCAATAATCCTTTAGTACTCCCAAATGATATGAATCCGCAGTTGAGGAACTTAATAGGGGGATTACTTTTCAAAGACCCAAGACTAAGGATGACATTGCGTGATGTTGCGGAGGATAGCTGGGTTATTGGAGATGATGGGCCAATTCTGGAGTACCTCTGTTGGTGCAAAAGGAAGAGCTTGGAGATAGAGGACAATGTTGAGACCAATATGATTGCTTGA 1227 0.4238 MFNKTLSFAKAMGCCNCFGFIRRRNSPMAKPTINHNHSQELLLDDDIEDEEHSYNDEGTNTTSGDDSEVQIRPKRSEEILNLRVDNGMICRQFPVKETHKVVRTEDENGNKIINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMTDVLREVLIMKMLEHPNIVNLIEVIDDPESDHFYMVLEYVEGKWVCEGTGPACGLGEETARRYLRDIISGLTYLHAHNIVHGDIKPDNLLVTRHGTVKIGDFSVSQAFENDNDELRRSPGTPVFTAPECIIGLTYHGKAADTWAVGVTLYCMILGEYPFLGDTLQDTYDRIVNNPLVLPNDMNPQLRNLIGGLLFKDPRLRMTLRDVAEDSWVIGDDGPILEYLCWCKRKSLEIEDNVETNMIA 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1878g00005 408 SMART serkin_6 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1878g00005 408 FunFam Serine/threonine-protein kinase GRIK2 106 408 - -
Gabi1878g00005 408 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524
Gabi1878g00005 408 Gene3D Transferase(Phosphotransferase) domain 1 215 383 - -
Gabi1878g00005 408 Pfam Protein kinase domain 118 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1878g00005 408 ProSiteProfiles Protein kinase domain profile. 116 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1878g00005 408 MobiDBLite consensus disorder prediction 51 70 - -
Gabi1878g00005 408 Gene3D Phosphorylase Kinase; domain 1 110 212 - -
Gabi1878g00005 408 SUPERFAMILY Protein kinase-like (PK-like) 112 390 IPR011009 -
Gabi1878g00005 408 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 47 379 - -
Gabi1878g00005 408 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Gabi1878g00005 408 CDD STKc_LKB1_CaMKK 122 377 - -
Gabi1878g00005 408 FunFam Serine/threonine-protein kinase Ssp1 110 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1878g00005 Gabi-Chr1878 102311 108300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1878g00005 122 376 CBL-interacting serine-threonine protein kinases AT5G35410 32.941 3.43e-43 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Gabi1878g00005 Pkinase 3.7e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1878g00005 K00908 - gmx:100789178 687.182