Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1874g00001 ATGGACATTCTTTCTTTCATTAGTGTCCTTGTTCATATCCTTGTTTCTTCACTCACAATTTCCCTTTCAGTTGATTCCATTGCACTGTCACATTCCCTCACTGATGGCATGACCATAGTTTCACAAGGTGGAACCTTTGAACTTGGTTTCTTCAGCCCTGGGAAATCCAAGAAACATTACCTGGGAATTTGGTACAAAAACATCTCAGTTAAGACAGTTGTTTGGGTTGCTAACAGGGTCAACCCAATCAATGACTCCTCTGGTACCTTAACAGTGAATAGGACTGGCCATCTTGTCCTTCACCAGAATGACACTGTTGTTTGGAACACAACTTCTCCGAGAATACCACAGAATCCAATGGCTGAGCTCTTGGATTCTGGGAATCTTGTGGTAAGAGATGAGAATGATGCAAACCCAGAAGCCTACTTGTGGCAAAGCTTTGACTATCCATGTGATACATTGTTGCCAGGGATGAAATTTGGATGGGACTTAAGAACAGGTTTCAATTGGACTGTAACAGCATGGAATAGTCCAGATGATCCAGCTCCAGGAGACTTTTCTTGTGTCAATCACAACAACAATTATCCTGATACATATTTGATGAAGGGAACCAAAAAGTACAGCAGACTTGGACCATGGAATGGCTTGCATGCAAGTGGTACTCTAGATGTAAAGCCCAACCCAATTTATTATTTCAAGTATTTTTACAATAAGGATGAGCTATATAACACGTACTACCTCATGAATAGTTCTGTATATTCAAGACTTGTAATCAACCAAACTGATTACGCCCTTTACCGCTATGTGTGGGTGGAGAGTGATCAAAATTGGATGGTTTATAAAACAAAGCCATTAGACTACTGCGACCATTACGGCCTGTGTGGAGCCAATGGCAACTGTGTCATCAATGAATCACCAATTTGCCAATGTCTTAAAGGGTTCAGACCTGAATCGTTACTAGCATGGAACACAATGGAATGGTCTCAAGGATGTGTTCGCAACAAACCATTAAGATGCAATGATAAGCACAAAGATGGGTTTGTCAAATTGAAGGGGTTGAAAGTGCCAGATACTATGCATTCTTGGTTGGATGAGACAATAGATTTAGAGGAATGCAGAGCCAAGTGCATGGATAACTGTTCTTGTATGGCCTATACTAATTCAGATATTAGAGGACAAGGGAGTGGCTGTGCCATGTGGTTTGGCAATCTAATTGATGTAAGACAGTTTGCAGTTGGGGGGCAGGACTTATATATTAGAATGGACGCTTCAGAATTAGAGGCGGAACACGGGCACCGGAAGAAGTTTACCATAATAGTTGGTAGCACCATTGCTGCAATTTCAGGGATGATTTTAGTTTGTTGCTGTAGTATCTATAAATTCCGCAGAAACGGAACTGGTAGGATGACTTACTCCCATGTTCATCTATGTACTTTATATATTTTGCCTGAGGATGATCTAGATCTCCCGTTGCTTGACCTGTCAGCAATAGCCAGTGCCACCAATAACTTCTCAATGAATAACAAAATTGGAGAAGGTGGATTTGGACCTGTCTACAAGGGAAGATTAGGAAATGGGAAAGAAATTGCTGTGAAGAGACTTTCAAGAAGCTCAACACAAGGAATAATCGAGTTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAGCACCGAAATCTTGTAAAACTTCTGGGGTGTTGCATTCAAGGAGAAGAAAAAATGCTGATTTATGAATACATGCCAAACAGCAGCTTGGACACCTTCATTTTTGATCATAACAAAGGGAAGTTTCTGGATTGGTCTAAGCGCTATCACATTATTTGTGGAATTGCTCGGGGCCTTATGTATCTTCATCAAGATTCTAGACTAATGATTATTCATAGAGATCTCAAAGCAAGTAACGTTTTACTTGATGATAAGCTGAACCCAAAAATATCAGATTTTGGCATGGCTAAATCTTCTGCTACTGAGCAAAATGAAGGAAATACAAATAGAATTGTGGGGACCTATGGCTACATGGCACCTGAATATGCTGCTTATGGACGATTTTCAGTGAAATCTGATGTCTTCAGTTTTGGTATTTTGGTGCTGGAGATTGTGTATGGAAAAAGAAATAGAGATTTTTGTGATGCAAACCGAATCCATAACCTTATTGGTCAGGCCTGGTTGTTGTGGATGGAAGGCAAGGCTCTAGAAATGATTGACAAAAACTTGGAAGACTCATGGATTGAATCAGAGGTATTGCGTTGCATCCATATTAGTCTTTTGTGTGCCCAACAACATCCAGAGGATAGACCAACCATGTCATATGTGGTGCTTATGCTGGGAAGTGAGATAGAACTTCCTAAGCCTAAAGAGCCTGGCTTCTTCACTGGCAAGGCTTCATTTAAAGGAAATTGTACTTCAAATCCAATGAAATCTTGCTCAAACAATGAAGTTACCATAACATCATTACAACCCAGGTGA 2466 0.4027 MDILSFISVLVHILVSSLTISLSVDSIALSHSLTDGMTIVSQGGTFELGFFSPGKSKKHYLGIWYKNISVKTVVWVANRVNPINDSSGTLTVNRTGHLVLHQNDTVVWNTTSPRIPQNPMAELLDSGNLVVRDENDANPEAYLWQSFDYPCDTLLPGMKFGWDLRTGFNWTVTAWNSPDDPAPGDFSCVNHNNNYPDTYLMKGTKKYSRLGPWNGLHASGTLDVKPNPIYYFKYFYNKDELYNTYYLMNSSVYSRLVINQTDYALYRYVWVESDQNWMVYKTKPLDYCDHYGLCGANGNCVINESPICQCLKGFRPESLLAWNTMEWSQGCVRNKPLRCNDKHKDGFVKLKGLKVPDTMHSWLDETIDLEECRAKCMDNCSCMAYTNSDIRGQGSGCAMWFGNLIDVRQFAVGGQDLYIRMDASELEAEHGHRKKFTIIVGSTIAAISGMILVCCCSIYKFRRNGTGRMTYSHVHLCTLYILPEDDLDLPLLDLSAIASATNNFSMNNKIGEGGFGPVYKGRLGNGKEIAVKRLSRSSTQGIIEFKNEVKLIAKLQHRNLVKLLGCCIQGEEKMLIYEYMPNSSLDTFIFDHNKGKFLDWSKRYHIICGIARGLMYLHQDSRLMIIHRDLKASNVLLDDKLNPKISDFGMAKSSATEQNEGNTNRIVGTYGYMAPEYAAYGRFSVKSDVFSFGILVLEIVYGKRNRDFCDANRIHNLIGQAWLLWMEGKALEMIDKNLEDSWIESEVLRCIHISLLCAQQHPEDRPTMSYVVLMLGSEIELPKPKEPGFFTGKASFKGNCTSNPMKSCSNNEVTITSLQPR 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1874g00001 821 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Gabi1874g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 477 579 - -
Gabi1874g00001 821 Pfam S-locus glycoprotein domain 209 317 IPR000858 GO:0048544
Gabi1874g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Gabi1874g00001 821 Gene3D Hepatocyte Growth Factor 339 418 - -
Gabi1874g00001 821 CDD PAN_AP_plant 336 420 - -
Gabi1874g00001 821 SMART ntp_6 342 421 IPR003609 -
Gabi1874g00001 821 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Gabi1874g00001 821 Gene3D Transferase(Phosphotransferase) domain 1 580 783 - -
Gabi1874g00001 821 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 13 766 - -
Gabi1874g00001 821 CDD B_lectin 30 150 IPR001480 -
Gabi1874g00001 821 SUPERFAMILY Protein kinase-like (PK-like) 489 775 IPR011009 -
Gabi1874g00001 821 Gene3D Phosphorylase Kinase; domain 1 477 579 - -
Gabi1874g00001 821 Pfam Domain of unknown function (DUF3403) 779 821 IPR021820 GO:0004674
Gabi1874g00001 821 ProSiteProfiles PAN/Apple domain profile. 339 423 IPR003609 -
Gabi1874g00001 821 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
Gabi1874g00001 821 PIRSF SRK 1 821 IPR024171 GO:0004674
Gabi1874g00001 821 ProSiteProfiles EGF-like domain profile. 284 317 IPR000742 -
Gabi1874g00001 821 Gene3D - 20 147 IPR036426 -
Gabi1874g00001 821 Pfam PAN-like domain 339 407 IPR003609 -
Gabi1874g00001 821 SMART serkin_6 504 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1874g00001 821 SMART blect_4 30 150 IPR001480 -
Gabi1874g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 338 421 - -
Gabi1874g00001 821 ProSiteProfiles Protein kinase domain profile. 504 789 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1874g00001 821 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Gabi1874g00001 821 Pfam D-mannose binding lectin 72 175 IPR001480 -
Gabi1874g00001 821 Pfam Protein tyrosine and serine/threonine kinase 505 772 IPR001245 GO:0004672|GO:0006468
Gabi1874g00001 821 CDD STKc_IRAK 510 775 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1874g00001 Gabi-Chr1874 9797 13666 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1874g00001 492 789 Receptor kinase-like Gene Family AT4G23230 60.201 4.54e-124 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Gabi1874g00001 PK_Tyr_Ser-Thr 6.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1874g00001 - - pcin:129316778 1058.51