Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1873g00006 ATGGAAGAATCAAATGAGTTGCATTCAGAAGACAATAAAGACTCTATGGAGAAAAACAAGAAAAGAAGGCTCAAAACTCCTGCCCAGGTTATGGCCTTGGAAAAATTTTATGATGAGTACAAATATCCTACAGAGGAAATGAAATTAGAACTTGCAGATGAATTAGCGTTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAAATTGTTGAAAAATGAAGTACATGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCATGATCGTGGCAGTGGGCTAGGGCAGGATTCATGTGGAAGCACCAAACACGGTGATTATAGGTATATGGATCCCAAAGAGGTTGAGAGTCATGGCCTCTATAACCATGACTTTTCAGCTGCTGATATGACCTATGCACATAGGAACCATTATACAGAAAATGATAGTGCAACAGATAATACATCATCTGAGAGTAGCTCATCTTTGCAAGAACGGTTGTTTCCTCAAGGCCAGGATCCATATGATATGGAGGATTCTAGATATTTAACACCTAACGGAGCTCTTCCACCCCGAAATCCCAAGGGTGCAATTAACATGGGATATAAACCATCTGGATATTTGAAAGTGAAGGGAGAGATAGAAAATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGAAGGCATTATCTGGAAGATGGTCCACTACTTAGTGTCGATTTTGATACAATTCCTCCAGGGGCATTTGAATGTCAAAATGCAGATCCCGTTGATGAACCATACTATGTTCCAAATCCTGCTCTTCCAAATTCTCCAGAAGTCTCTGCTGTGAAAAGGCAATCCAGTCTTAACTCCAGATATGATCCATATTTTACCAAATTGAATTCCCAAGATTCACATATGGAAGGAGGTGACTTTGGCTCCTTGCATGATTCTGATTTCCGGGATAAGCATGATAAGAAAGCCGGCCGACATATAAAACAAAGACCAACTTTTCACAGTTGTACAAATCCTTTGCCTGGCAGGAGCTCTTCCCTGGATTTGTATGTAGACTCTACTGGGGAAGCATCTGCTTATAATAGCACTAAGAATCATAGGAAGGGCACTAAGCTTGGTGTTGAGGGGATGAGATCTGATTCTGCTTCAAACCCTAGTGATAACTATGAAGAGAATAACCTTGTGGTTAAGCAGACAGATTCAATGCTACATGGCTACGATAACTTCAATCTGAAGAATGTGCAAAGGAGTGAATATGTAAAATCTAAGCCTTCAAATTCAATACATAATTCTCGAAAATCTGAGGATATTGAAGAAAGAGGGCTTTCTAAAAGGATGGCAAAGGAAGAGAAGTTTAATGGGGATAGAAAGGTAAAAAAACTATATCATGATTCAGATAGGGTAATGATGCTTTCAAATGAAATGGTTGCAAAACGAGCTAAAGTTGATCTACCTCAAGAATATGATGTTAAACAAGCACTCGTTGCTGAGAAGGAACCAAGGAAAAATCAGAGATCTGCTGCAGAGATGCCATCTAGCTTTAGTGAAGATGAAACTGCTGAAACTAGTTCCTCACTGGATTAA 1581 0.3934 MEESNELHSEDNKDSMEKNKKRRLKTPAQVMALEKFYDEYKYPTEEMKLELADELALTEKQISGWFCHRRLKDKKLLKNEVHANGRQDRSSGVIHDRGSGLGQDSCGSTKHGDYRYMDPKEVESHGLYNHDFSAADMTYAHRNHYTENDSATDNTSSESSSSLQERLFPQGQDPYDMEDSRYLTPNGALPPRNPKGAINMGYKPSGYLKVKGEIENAAITAVKKQLGRHYLEDGPLLSVDFDTIPPGAFECQNADPVDEPYYVPNPALPNSPEVSAVKRQSSLNSRYDPYFTKLNSQDSHMEGGDFGSLHDSDFRDKHDKKAGRHIKQRPTFHSCTNPLPGRSSSLDLYVDSTGEASAYNSTKNHRKGTKLGVEGMRSDSASNPSDNYEENNLVVKQTDSMLHGYDNFNLKNVQRSEYVKSKPSNSIHNSRKSEDIEERGLSKRMAKEEKFNGDRKVKKLYHDSDRVMMLSNEMVAKRAKVDLPQEYDVKQALVAEKEPRKNQRSAAEMPSSFSEDETAETSSSLD 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 427 453 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 295 324 - -
Gabi1873g00006 526 SUPERFAMILY Homeodomain-like 12 80 IPR009057 -
Gabi1873g00006 526 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 149 168 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 304 320 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 146 176 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 493 526 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 82 110 - -
Gabi1873g00006 526 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Gabi1873g00006 526 SMART HOX_1 18 80 IPR001356 GO:0003677
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 419 453 - -
Gabi1873g00006 526 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 526 - -
Gabi1873g00006 526 Gene3D - 8 92 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 1 25 - -
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 359 388 - -
Gabi1873g00006 526 CDD homeodomain 20 75 IPR001356 GO:0003677
Gabi1873g00006 526 MobiDBLite consensus disorder prediction 505 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1873g00006 Gabi-Chr1873 106470 111644 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1873g00006 3 526 Homeobox Transcription Factor Family AT4G03250 41.252 1.85e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gabi1873g00006 Homeodomain 8.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1873g00006 - - gmx:100812697 773.852