Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1873g00004 ATGAGCAACATCAAACTAACCTTCGCCAGAATCTCTGATTCCTTGTCCAAGAAGAACAACAAGAAGCTCTTCTTGGCTCTCTTTGCTACCTTGGTTCTTGTGGTCGCCATTGTCGCCATAGTAAGCTCCCACAAGAGCTCCTACGACAACAATGACAAGTCCACATCCCACGCCATCATAAGAAGTGCTTGCAGCAGTACATTGTACCCAGAATTGTGCTTCTCAACCATAGCCTCCGAACCTTCCCTTTCACAAAAAGTTTCCAGCCACATAAATGTGATAGAGTTGTCCTTGAACAAAACCATTGGAATAGTTCAGCGCAATTACTTCACCATTGAGAAGCTCTTAACACGAAAGGGTCTCACCAAGAGGGCGAAAACCGCGCTCCATGATTGCTTGGAAATCATTGATGAGACCCTCGATGAGCTTGACAAGGCCAAGGATGACCTCAAAGATTACCCTTCTAGCAAGAAGTCTTTGCCTCAACAAGCTGAAGATCTTAAGACTCTAATCAGTTCTGCCATAACCAACCAAGTTACTTGCTTGGATGGTTTCTCTCATGCTGCTGCTGACAAAATCCTTAGGAAATTTCTTGATGCAGGACAAGTGCATGCTGAGCACTTGTGCAGCAATGCATTGGCCATGACAAAGAATCTCACTGATACTGACATGGCCAGTTATGAGAAGAATAAGATGGTGGGAAGCAATAACAGGAAGCTGTTGCCAGAAGAAGATGGGATAAAGTGGCCGGAGTGGATTTCTGCCGTGGACAGACGGCTTTTGCAGTCGGGTACGGTGAATCCTGACGTGGTGGTGGCTGCGGATGGCAGCGGGAACTTCAGGACGGTGTCAGCTGCGGTGGCTGCAGCTCCTGAGCGGAGTAGCAAGAGATATGTTATTAAGATCAAAGCAGGAGTATACAGAGAGAATGTGGATGTGCCAAGCAGGAAGACCAACATCATGTTCTTGGGTGATGGTAGAACCAAAACTATCATCACAGCAAGTAGAAATGTTGTTGATGGAAGTACAACCTTCAACTCTGCCACTGTAGCCGTAGTGGGTGAACGATTCTTAGCACGAGGCATAACTTTCCAGAATGCAGCAGGTCCATCAAAGCACCAAGCAGTGGCACTAAGAGTTGGTGGTGACCTCTCAGCATTCTACTTGTGTGGCTTCATAGCATACCAAGACACCCTTTATGTCCACACCAATCGCCAATTCTTTGTGAACTGCTACATAGCAGGCACAATCGATTTCATCTTTGGCAATTCAGCTGTTGTGTTACAAAATTGTGACATCCACGCTAGGCGTCCAAATGCAGGACAAAAAAACATGGTCACAGCACAAGGTCGTGTTGACCCTAACCAAAACACTGGCATTGTTATCCAAAAATGTAGGATTGGTGCTACCAAGGATTTGGAAGCTGTTAAGGGCACCTTCCCTACTTTTCTTGGTAGGCCTTGGAAGGAGTATTCTAGGACTGTGATAATGCAATCAACTATAAGTGATGTTATTGACCCTGCTGGGTGGTTTGAGTGGGATGGGGATTTTGCATTGAATACTTTGTTTTATGGGGAGTATCAGAACACTGGGGCTGGTGCTGCCACCTCAAAGAGGGTTAAGTGGAAAGGGTTTAAGGTCATTACTAGTGCTACTGAGGCTCAGTCTTTTACTCCTGGGAATTTCATTTCAGGTTCTAGCTGGTTGGGCTCTACTGGATTCCCATTCTCTCTTGGGCTGTAG 1743 0.4607 MSNIKLTFARISDSLSKKNNKKLFLALFATLVLVVAIVAIVSSHKSSYDNNDKSTSHAIIRSACSSTLYPELCFSTIASEPSLSQKVSSHINVIELSLNKTIGIVQRNYFTIEKLLTRKGLTKRAKTALHDCLEIIDETLDELDKAKDDLKDYPSSKKSLPQQAEDLKTLISSAITNQVTCLDGFSHAAADKILRKFLDAGQVHAEHLCSNALAMTKNLTDTDMASYEKNKMVGSNNRKLLPEEDGIKWPEWISAVDRRLLQSGTVNPDVVVAADGSGNFRTVSAAVAAAPERSSKRYVIKIKAGVYRENVDVPSRKTNIMFLGDGRTKTIITASRNVVDGSTTFNSATVAVVGERFLARGITFQNAAGPSKHQAVALRVGGDLSAFYLCGFIAYQDTLYVHTNRQFFVNCYIAGTIDFIFGNSAVVLQNCDIHARRPNAGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKGTFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWFEWDGDFALNTLFYGEYQNTGAGAATSKRVKWKGFKVITSATEAQSFTPGNFISGSSWLGSTGFPFSLGL 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1873g00004 580 ProSitePatterns Pectinesterase signature 2. 413 422 IPR033131 -
Gabi1873g00004 580 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 221 IPR035513 -
Gabi1873g00004 580 FunFam Pectinesterase 56 220 - -
Gabi1873g00004 580 SMART PMEI_2 55 215 IPR006501 GO:0004857
Gabi1873g00004 580 Pfam Pectinesterase 269 565 IPR000070 GO:0030599|GO:0042545
Gabi1873g00004 580 NCBIfam pectinesterase inhibitor domain 32 220 IPR006501 GO:0004857
Gabi1873g00004 580 FunFam Pectinesterase 263 580 - -
Gabi1873g00004 580 SUPERFAMILY Pectin lyase-like 266 579 IPR011050 -
Gabi1873g00004 580 Gene3D - 263 580 IPR012334 -
Gabi1873g00004 580 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 220 IPR035513 -
Gabi1873g00004 580 CDD PMEI-like_3 62 220 - -
Gabi1873g00004 580 PANTHER PECTINESTERASE 33 570 - -
Gabi1873g00004 580 Pfam Plant invertase/pectin methylesterase inhibitor 59 215 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1873g00004 Gabi-Chr1873 30931 33813 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1873g00004 18 580 Carbohydrate Esterase AT3G14310 67.581 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1873g00004 K01051 - gmx:100776623 785.408