Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1873g00003 ATGAGCAACATCAAACTAACCTTCGCCAGAATCTCTGATTCCTTGTCCAAGAAGAACAACAAGAAGCTCTTCTTGGCTCTCTTTGCTACCTTGGTTCTTGTGGTCGCCATTGTCGCCATAGTAAGCTCCCACAAGAGCTCCTACGACAACAATGACAAGTCCACATCCCACGCCATCATAAGAAGTGCTTGCAGCAGTACATTGTACCCAGAATTGTGCTTCTCAACCATAGCCTCCGAACCTTCCCTTTCACAAAAAGTTTCCAGCCACATAAATGTGATAGAGTTGTCCTTGAACAAAACCATTGGAATAGTTCAGCGCAATTACTTCACCATTGAGAAGCTCTTAACACGAAAGGGTCTCACCAAGAGGGCGAAAACCGCGCTCCATGATTGCTTGGAAATCATTGATGAGACCCTCGATGAGCTTGACAAGGCCAAGGATGACCTCAAAGATTACCCTTCTAGCAAGAAGTCTTTGCCTCAACAAGCTGAAGATCTTAAGACTCTAATCAGTTCTGCCATAACCAACCAAGTTACTTGCTTGGATGGTTTCTCTCATGCTGCTGCTGACAAAATCCTTAGGAAATTTCTTGATGCAGGACAAGTGCATGCTGAGCACTTGTGCAGCAATGCATTGGCCATGACAAAGAATCTCACTGATACTGACATGGCCAGTTATGAGAAGAATAAGATGGTGGGAAGCAATAACAGGAAGCTGATGGTGAATGATAAGAGATATAATAAAATCATTCATTGGCCGGAGTGGATTTCTGCCGTGGACAGACGGCTTTTGCAGTCGGGTACGGTGAATCCTGACGTGGTGGTGGCTGCGGATGGCAGCGGGAACTTCAGGACGGTGTCAGCTGCGGTGGCTGCAGCTCCTGAGCGGAGTAGCAAGAGATATGTTATTAAGATCAAAGCAGGAGTATACAGAGAGAATGTGGATGTGCCAAGCAGGAAGACCAACATCATGTTCTTGGGTGATGGTAGAACCAAAACTATCATCACAGCAAGTAGAAATGTTGTTGATGGAAGTACAACCTTCAACTCTGCCACTGTAGCCGTAGTGGGTGAACGATTCTTAGCACGAGGCATAACTTTCCAGAATGCAGCAGGTCCATCAAAGCACCAAGCAGTGGCACTAAGAGTTGGTGGTGACCTCTCAGCATTCTACTTGTGTGGCTTCATAGCATACCAAGACACCCTTTATGTCCACACCAATCGCCAATTCTTTGTGAACTGCTACATAGCAGGCACAATCGATTTCATCTTTGGCAATTCAGCTGTTGTGTTACAAAATTGTGACATCCACGCTAGGCGTCCAAATGCAGGACAAAAAAACATGGTCACAGCACAAGGTCGTGTTGACCCTAACCAAAACACTGGCATTGTTATCCAAAAATGTAGGATTGGTGCTACCAAGGATTTGGAAGCTGTTAAGGGCACCTTCCCTACTTTTCTTGGTAGGCCTTGGAAGGAGTATTCTAGGACTGTGATAATGCAATCAACTATAAGTGATGTTATTGACCCTGCTGGGTGGTTTGAGTGGGATGGGGATTTTGCATTGAATACTTTGTTTTATGGGGAGTATCAGAACACTGGGGCTGGTGCTGCCACCTCAAAGAGGGTTAAGTGGAAAGGGTTTAAGGTCATTACTAGTGCTACTGAGGCTCAGTCTTTTACTCCTGGGAATTTCATTTCAGGTTCTAGCTGGTTGGGCTCTACTGGATTCCCATTCTCTCTTGGGCTGTAG 1755 0.4564 MSNIKLTFARISDSLSKKNNKKLFLALFATLVLVVAIVAIVSSHKSSYDNNDKSTSHAIIRSACSSTLYPELCFSTIASEPSLSQKVSSHINVIELSLNKTIGIVQRNYFTIEKLLTRKGLTKRAKTALHDCLEIIDETLDELDKAKDDLKDYPSSKKSLPQQAEDLKTLISSAITNQVTCLDGFSHAAADKILRKFLDAGQVHAEHLCSNALAMTKNLTDTDMASYEKNKMVGSNNRKLMVNDKRYNKIIHWPEWISAVDRRLLQSGTVNPDVVVAADGSGNFRTVSAAVAAAPERSSKRYVIKIKAGVYRENVDVPSRKTNIMFLGDGRTKTIITASRNVVDGSTTFNSATVAVVGERFLARGITFQNAAGPSKHQAVALRVGGDLSAFYLCGFIAYQDTLYVHTNRQFFVNCYIAGTIDFIFGNSAVVLQNCDIHARRPNAGQKNMVTAQGRVDPNQNTGIVIQKCRIGATKDLEAVKGTFPTFLGRPWKEYSRTVIMQSTISDVIDPAGWFEWDGDFALNTLFYGEYQNTGAGAATSKRVKWKGFKVITSATEAQSFTPGNFISGSSWLGSTGFPFSLGL 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1873g00003 584 NCBIfam pectinesterase inhibitor domain 32 220 IPR006501 GO:0004857
Gabi1873g00003 584 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 221 IPR035513 -
Gabi1873g00003 584 SMART PMEI_2 55 215 IPR006501 GO:0004857
Gabi1873g00003 584 PANTHER PECTINESTERASE 33 574 - -
Gabi1873g00003 584 Gene3D - 267 584 IPR012334 -
Gabi1873g00003 584 FunFam Pectinesterase 267 584 - -
Gabi1873g00003 584 FunFam Pectinesterase 56 220 - -
Gabi1873g00003 584 Pfam Plant invertase/pectin methylesterase inhibitor 59 215 IPR006501 GO:0004857
Gabi1873g00003 584 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 220 IPR035513 -
Gabi1873g00003 584 CDD PMEI-like_3 62 220 - -
Gabi1873g00003 584 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Gabi1873g00003 584 SUPERFAMILY Pectin lyase-like 269 583 IPR011050 -
Gabi1873g00003 584 Pfam Pectinesterase 273 569 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1873g00003 Gabi-Chr1873 30931 33813 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1873g00003 18 584 Carbohydrate Esterase AT3G14310 67.238 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1873g00003 K01051 - gmx:100776623 779.245