Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1865g00025 ATGGAACTGAAGCAGAAGCACACGAAACTGGGCAAGGTGTTAATGGTTGCATTAGCCCTTCTAGTATCATCATCAGTTGCAGCTGATCAAGCCAAACTTTCTCCACCACCAAATCAAACCCTTCCTGGCTGCAAGGACACTTGTGGAGATGTCAAGATTCCATATCCATTCGGCACAGGCATGTCATCTACATCAGATCATAAGTCATGTTTCTTGCATAATGGATTTAGCCTTACTTGCAATAACTCCATATTATATTTGGGTAACGTCCAAGTTTTAAACATAAGCGTCCAAGGTCAAATGGACTTATTGTTTTACGTCTCATCACCAAATTGCTATAGCCAAGGTGGAAAATTCAACTCCGGGAACCTTCCCACGCTCAAATTTGCTAATTTCAGCATTTCAAGGAAGGAAAACAAGTTCCTAACTGTTGGATGCAATAGTTTTGGATATCTCAATAGCTTTTACAACAGCGAGGTATATTCAACTGGGTGCTTATCAAGATGTTATGGCAATGAAAGGAAAATCGAGAATGGAACGTGTTCCGGCATCGGGTGCTGCCAGGTGGATATTCCTCCTTCAATGAGGAATATCAGCATAAAAGCAAATAGCTTCACCAATTCAACCGAATATTCGGGGGGAAACTGCAGCTATTCCTTTGTTGTCAAAGATGGCAACTATACTTTTGACACCAATCATTTATATGATTTCCCTTACGAGATGCTCCCCATGGTTGTTGATTGGACCGTAGGAAACCAAAGTTGTGATGCTTCCAAAAGCAGAGTCCACTATGCATGCATGAAAAATACCTATTGCAACGACAAGGACACTGATCTGCTTGGTTACCGATGCATATGTAATGAAGGTTATGAAGGAAATCCATACCATCCGGATGGTTGTAGAGATATTGATGAATGTAAGACATCAAATAATACATGCCTAAGTGAAAATAATTGTCACAACACGGATGGGTCTTACAAATGTTTCTGTCCTAAGGGGCAATCCGGAGATGGAACAAAGAACGGAGGGTGCCACCGACGAGATATAGTTACCCAGGTTGTCATTGGAACAGGTGCAGGATTCATACTTCTAATTGTGGGAATTTCCTCGCTGTACTTAATATACGAGAAAAGGAAACTCATCAAATTGAAGGAGAAGTTCTTTAAGCAAAATGGCGGTATCATTTTGCAACAGCGACTCTCTGCAGGAGAAAACACTTCTCAATCTACTACAGTGTTCTCAGCAGAGCAACTTAAGAAGGCCACCAACAACTATGATGAGAGCTTAATCATCGGCAGAGGAGGTTATGGTACTGTTTACAAAGGAATTTTGTCAGATAAGAGGATAGTTGCCATCAAGAAGTCCAAAATTGTGGATCAGAGCCAAATTGAACAATTCATAAACGAGGTGATTGTGCTATCACAAATTAATCATAGGAATGTGGTCAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTTCCTTCATTGGTTTATGAATTTGTTAACAATGGTACACTTTTTGATTATATACACAAAGAAGGCAAGGCAGGTAATGTACCTTGGAAAACACGTCTAAGGATAGCAGCAGAGGCTGCAGGGGCCCTATCTTACCTGCACTCAGCTGCTTCTATACCAATTATACATAGAGATGTGAAGACTGCCAACATTCTCTTGGATGACAGTTACACTACCAAAGTGTCTGATTTTGGAGCATCAAGATTGGTTCCTCTTGATCAAACTGAATTAGCCACAATGGTGCAAGGAACTATTGGTTATTTGGACCCAGAGTACATGCAAACAAGCCAACTTACTGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTGCTTGTGGAGCTGCTTACAGGGGAGAAACCTCTTTGTTTTGACAGGTCAGAGGAGAAAAGAAGTCTTGCTATGCACTTTCTATCTTGCTTGAGAGAGGATCGCTTGTTTGAGGTTCTTCAATTTGGCATTTTGAATGTAGAAAATAAGGAGGAGATCAAGGAGGTTGCTATTCTTGCAACAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGACGGAATAAGGCTAATGGAAAAGCATCCATGGATCAACACAGACGTGAATCTAGAGGAGACTCATTACTTGCTTCATGAGGCATCATCGAGCATTCGTGAACATGGTGATAGCAGCAGCCATCAAAATACTGGGTATGACAGCATCAAGGATCATGTACTCATTGACTTCGATGATGGAAGATGA 2271 0.413 MELKQKHTKLGKVLMVALALLVSSSVAADQAKLSPPPNQTLPGCKDTCGDVKIPYPFGTGMSSTSDHKSCFLHNGFSLTCNNSILYLGNVQVLNISVQGQMDLLFYVSSPNCYSQGGKFNSGNLPTLKFANFSISRKENKFLTVGCNSFGYLNSFYNSEVYSTGCLSRCYGNERKIENGTCSGIGCCQVDIPPSMRNISIKANSFTNSTEYSGGNCSYSFVVKDGNYTFDTNHLYDFPYEMLPMVVDWTVGNQSCDASKSRVHYACMKNTYCNDKDTDLLGYRCICNEGYEGNPYHPDGCRDIDECKTSNNTCLSENNCHNTDGSYKCFCPKGQSGDGTKNGGCHRRDIVTQVVIGTGAGFILLIVGISSLYLIYEKRKLIKLKEKFFKQNGGIILQQRLSAGENTSQSTTVFSAEQLKKATNNYDESLIIGRGGYGTVYKGILSDKRIVAIKKSKIVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPSLVYEFVNNGTLFDYIHKEGKAGNVPWKTRLRIAAEAAGALSYLHSAASIPIIHRDVKTANILLDDSYTTKVSDFGASRLVPLDQTELATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPLCFDRSEEKRSLAMHFLSCLREDRLFEVLQFGILNVENKEEIKEVAILATKCLRLRGEERPSMKEVAMELDGIRLMEKHPWINTDVNLEETHYLLHEASSSIREHGDSSSHQNTGYDSIKDHVLIDFDDGR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1865g00025 756 ProSiteProfiles EGF-like domain profile. 302 340 IPR000742 -
Gabi1865g00025 756 FunFam Wall-associated receptor kinase 2 501 718 - -
Gabi1865g00025 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Gabi1865g00025 756 ProSitePatterns Protein kinases ATP-binding region signature. 431 454 IPR017441 GO:0005524
Gabi1865g00025 756 Gene3D Plasmodium vivax P25 domain 245 350 - -
Gabi1865g00025 756 Pfam Wall-associated receptor kinase galacturonan-binding 44 100 IPR025287 GO:0030247
Gabi1865g00025 756 Gene3D Transferase(Phosphotransferase) domain 1 501 716 - -
Gabi1865g00025 756 ProSitePatterns Calcium-binding EGF-like domain signature. 302 328 IPR018097 GO:0005509
Gabi1865g00025 756 CDD EGF_CA 302 337 - -
Gabi1865g00025 756 SUPERFAMILY EGF/Laminin 302 337 - -
Gabi1865g00025 756 Gene3D Phosphorylase Kinase; domain 1 392 500 - -
Gabi1865g00025 756 CDD STKc_IRAK 431 698 - -
Gabi1865g00025 756 Pfam Calcium-binding EGF domain 302 340 IPR001881 GO:0005509
Gabi1865g00025 756 SMART egf_5 254 301 IPR000742 -
Gabi1865g00025 756 SMART egf_5 305 345 IPR000742 -
Gabi1865g00025 756 SMART egfca_6 302 345 IPR001881 GO:0005509
Gabi1865g00025 756 FunFam Wall-associated receptor kinase 2 395 500 - -
Gabi1865g00025 756 FunFam Fibrillin 2 297 342 - -
Gabi1865g00025 756 Pfam Protein kinase domain 427 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1865g00025 756 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 319 330 IPR000152 -
Gabi1865g00025 756 ProSiteProfiles Protein kinase domain profile. 425 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1865g00025 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 708 IPR045274 GO:0007166
Gabi1865g00025 756 SUPERFAMILY Protein kinase-like (PK-like) 406 695 IPR011009 -
Gabi1865g00025 756 SMART serkin_6 425 707 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1865g00025 Gabi-Chr1865 224470 227910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1865g00025 44 756 Receptor kinase-like Gene Family AT1G21230 46.639 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Gabi1865g00025 Pkinase 5.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1865g00025 - - gsj:114381577 1030.78