Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1865g00020 ATGGACAACCCTGGTTCCTCGTCTTACATTGTAGTTGCATGTGATGCCACGAGAGATCGCAATGAGCATGAGATCAAGCTTGTCGTTGATCACCTTCGAAGCAGGGATGGCATTCTCTCTGCAGGTGACAGCTTGCTTGTGCTCGGTGTCTTGCATAAGGTGCCTCATCCAATGGGGTATCAGTTATTAGCATCCCCGGAGTCCTTTACTGGCACCAACATTCGTGCAATGGAGGAAGAAGTTAACAAGAAAGTTGATGCATATAAAAGTGTGCTTCTCCCTAGTTACGAAGAATTTGAAAATAATGGGGTTAGCATCGAAGTTAAAGTCACTGCCGGTTTTCCAATTCGACAGGTTGTTTTACAAGAGGTTACAAGCTGTAATGCATCTTGGGTAATTCTTGATAGGCATCTTCGGCGTGATTTGAGATTTTATAAGAACAAGATATCATGTAAGGTTGCGTTGGTTAAAGATGACTTGTCTGTGGATATTTGGAGATCTCATCATACACATGAAACGGATGTCACAGAACAAAAACTTATCTATTCTTTGTCAAAGTGTGTTTCACTATCAGATTGTCATAGTGTCGAAGATGTGGATCAATCTATTATCTTTTGCAAAGGTTATCCCGTTTCCACAACTTCTTCTGACAGCTCTAGTATGTTTAAGAGCACTAGCAGTACGAAATACTCAAGTTTTAGCAGGTCAGGGGAGAATAGTTCTTCAATAGATATTGGATCTTCCTCAGGCATAAGCATAAAAGGAGAATATGATCATCCCATTATTTCTCATATTTTCCAAAAGCAAAACAAATATGGGTTTCTACCAAATTCTTCAGATGCTCCAGTTCTTTGTACTGGTTGTGGGACAAGGACTGAATTATATACCAAGGAGTTATCGAGGTTTAGCTATTCTGATATACAACTTGCAACAAATGATTTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGCCACGTATACAAGGGGATGCTTAAAGATGGACAACAAATAGCAGCAAAGGTAAGGAAAGAAGAGAGCAAACAAGGGTTTTCTGAATTCCATTCTGAGGTTTACGTCTTGAGTTTTGCCCGACACAAGAATATAGTGATGCTTTTGGGTTACTGTTGCAAAGAAAGGCTAAATATTCTAGTATATGAATATATTTGCAATAAGTCTCTTGAATGGTATTTATTCGATAAAAATGATGGGGTTCTTGAGTGGCACCATAGATATGCTATTGCCATTGGAACTGCAAAAGGATTGCGTTTTCTACATGAGGATTGTCGTGGAGGTCCTATTATTCATCGGGACGTGAGACCAAGCAATATACTACTCACTCATGATTTTGTTCCCATGCTAGGTGATTTTGGCCTTGCAAAATGGAAGACTAGTGATAAGACTCTTCACACAAGGATAATGGGCACATTAGGATACCTTGCTCCTGAGTATGCTGAAGATGGTATTGTTTCTGTGAGGATAGATGTGTATGCTTATGGCATTGTTCTGTTACAATTGATATCAGGACGCAAAGCCAATTCTAGTCCAGATCAACAACTCTCCCTACGACAATGGGCTGAGCCAAGGATTGAGAAGTTAGCATTTCACGAACTCATTGACTCTCGTCTTGGGGAGTCATATAACTCGAATGAGCTATACCTTATGGCGAAAGCAGCATACTACTGTGTGCAAAGAAATCATGAGAAGCGCCCATCAATCGGAGAGGTTGTGCGCCTTCTTGAGGGACAAAACGACCACTTCCGCTCTATTGGAGACCAAATTATACCAAAATATAATATGTGA 1806 0.402 MDNPGSSSYIVVACDATRDRNEHEIKLVVDHLRSRDGILSAGDSLLVLGVLHKVPHPMGYQLLASPESFTGTNIRAMEEEVNKKVDAYKSVLLPSYEEFENNGVSIEVKVTAGFPIRQVVLQEVTSCNASWVILDRHLRRDLRFYKNKISCKVALVKDDLSVDIWRSHHTHETDVTEQKLIYSLSKCVSLSDCHSVEDVDQSIIFCKGYPVSTTSSDSSSMFKSTSSTKYSSFSRSGENSSSIDIGSSSGISIKGEYDHPIISHIFQKQNKYGFLPNSSDAPVLCTGCGTRTELYTKELSRFSYSDIQLATNDFSKDNLIGEGGYGHVYKGMLKDGQQIAAKVRKEESKQGFSEFHSEVYVLSFARHKNIVMLLGYCCKERLNILVYEYICNKSLEWYLFDKNDGVLEWHHRYAIAIGTAKGLRFLHEDCRGGPIIHRDVRPSNILLTHDFVPMLGDFGLAKWKTSDKTLHTRIMGTLGYLAPEYAEDGIVSVRIDVYAYGIVLLQLISGRKANSSPDQQLSLRQWAEPRIEKLAFHELIDSRLGESYNSNELYLMAKAAYYCVQRNHEKRPSIGEVVRLLEGQNDHFRSIGDQIIPKYNM 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1865g00020 601 ProSiteProfiles Protein kinase domain profile. 314 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1865g00020 601 Gene3D Transferase(Phosphotransferase) domain 1 391 594 - -
Gabi1865g00020 601 Gene3D Phosphorylase Kinase; domain 1 285 389 - -
Gabi1865g00020 601 ProSitePatterns Protein kinases ATP-binding region signature. 320 342 IPR017441 GO:0005524
Gabi1865g00020 601 SMART tyrkin_6 314 581 IPR020635 GO:0004713|GO:0006468
Gabi1865g00020 601 Pfam Protein kinase domain 315 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1865g00020 601 FunFam Lectin-domain containing receptor kinase A4.3 390 600 - -
Gabi1865g00020 601 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 286 389 - -
Gabi1865g00020 601 ProSitePatterns Tyrosine protein kinases specific active-site signature. 435 447 IPR008266 GO:0004672|GO:0006468
Gabi1865g00020 601 SUPERFAMILY Protein kinase-like (PK-like) 295 585 IPR011009 -
Gabi1865g00020 601 PANTHER OS01G0253100 PROTEIN 232 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1865g00020 Gabi-Chr1865 164075 175425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1865g00020 300 586 Trihelix Transcription Factor Family AT1G70460 46.259 1.28e-77 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Gabi1865g00020 Pkinase 1.4e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1865g00020 - - vun:114163670 876.7