Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1865g00013 ATGGAGGATTCTTCATCAGGTGAGGAAATCAAGACTTGTCTCCGTGGTCACTGGAGACCCGCTGAGGATGAAAAGCTCCGGCAACTTGTTCAACAATATGGTGCCCAAAACTGGAACTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCCAGAATTAATAGACAGCCATTTACAGAAGATGAAGAAGAGAGGCTATGTACAGCTCACCGAATTCATGGGAACAAGTGGGCACTAATAGCTAGGCTATTCCCAGGTCGAACTGATAATGCTGTGAAGAATCATTGGCATGTTATAATGGCACGAAAACAAAGAGAGCAATCTAAGCTATGCAGGAAGAGAAGCTTTCAAGATCTTTATATTGATTCTAACACTACTTCCTCGTCTAATAATAGTTTTCCTGAAAAAGGAACAAAACCTCATGAACTATTATTTAGCTCAAGAATTGGGTTAGAGAATACCACATACTTTGACTTCAGGAACCTCTATAATAAAGAAAGGATGATTGCAGCAAACTCTCCACCTAGTCCTTTGGCCCTTTTGAATTTTGGATCCAATATTGCATCGTTTAGGAACAGTCCTCAAGTAGCGGATTCGTCATTTAGGAAAGAAGGGAGAGATTATTTCAATAACTCTTGCTCTAACATTAACCTCTCAGAAAGCTCAAAAACTTCAGATAGATTTCTTTACAGAATTTATCCAAATCCTTCATCCTTCGGCACCTTTTATAGTAGGGTTGTTGTTCCAAGTCATTTTGGATTCCTTGATTCTGAAAAAGATGGAAATGGAAGGATAAAAAGGGACTTGATGAGTTTCTGCGATAACTCATCCAAGTTAGCAAAGTTGAGGGTTTCTTCTACAGAACAAGATCAAGTAGATGAGTCCAACAATATTGAACGGAAAGAAGTTCCTTTCATTGACTTCCTTGGTGTTGATGTCTCTTCATCATGA 987 0.3931 MEDSSSGEEIKTCLRGHWRPAEDEKLRQLVQQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRQPFTEDEEERLCTAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKLCRKRSFQDLYIDSNTTSSSNNSFPEKGTKPHELLFSSRIGLENTTYFDFRNLYNKERMIAANSPPSPLALLNFGSNIASFRNSPQVADSSFRKEGRDYFNNSCSNINLSESSKTSDRFLYRIYPNPSSFGTFYSRVVVPSHFGFLDSEKDGNGRIKRDLMSFCDNSSKLAKLRVSSTEQDQVDESNNIERKEVPFIDFLGVDVSSS 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1865g00013 328 PANTHER MYB PROTEIN-RELATED 15 150 - -
Gabi1865g00013 328 CDD SANT 18 59 IPR001005 -
Gabi1865g00013 328 Pfam Myb-like DNA-binding domain 18 78 - -
Gabi1865g00013 328 Gene3D - 14 66 - -
Gabi1865g00013 328 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Gabi1865g00013 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gabi1865g00013 328 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Gabi1865g00013 328 Gene3D - 68 129 - -
Gabi1865g00013 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gabi1865g00013 328 CDD SANT 69 109 IPR001005 -
Gabi1865g00013 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Gabi1865g00013 328 FunFam MYB transcription factor 15 66 - -
Gabi1865g00013 328 SMART sant 14 63 IPR001005 -
Gabi1865g00013 328 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1865g00013 Gabi-Chr1865 85354 86978 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1865g00013 13 122 MYB Transcription Factor Family AT1G17950 80.909 4.19e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1865g00013 Myb_DNA-bind_6 2.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1865g00013 K09422 - gmx:100802283 384.8