Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1865g00008 ATGGAATCCTCAGAGGGGTTGGAGGTGAAAAGCGAAGAGGATTCTACGCCTAATAATAAATGTAGCAAGTTCTACGATGTCTATGGTCCCCAAGGGAAGGCAGATATTGTTTTCAAGTCACCTGAAGATAATTCAACTCTGAATCTTAATGACATTCAAGGACTTATAACTTGGGTCCTTGGTGAAGGATTTATGCCATCATGGGCTTTCATCAAGAATAAACCTCTTATTCCTAAAGTGGTTATGCTCTATATGCCAGGCCTGGATGCAGCTTTGTTCTTGTCACAGTCTAAAATGCTTCCCAATTTTAAAAAATTGTGCGGAAAACCAAGGCCAGTCCTAGCTCTTAGCTGTGTATCAGATGGTATGCAGACAATAGATGCACTCCTAACATGCAAGGTGAAAAGAAAGAGAGATCAAAATAGTTCAGTTATGAGGAAGTCTACCCTGATATCTCGACAAGGCTGTGGTTGTACTGACAGTCTATCATTTATGGAGCTTACAAAAGACATTCCTTTCCCTGTTACATACTATACACTAACAGAGAAAGAACTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGCTTTGTTTCTACTTTGCCCGCTCCTTTGGGATCTTCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAGGGTTTTGAGCTGACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGATGGATAAATTGGTTAAACCTTCAAATGCTATCACTGATTACAACACAAGATATAGTGGAATAACATCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTTCTAGAGCTGGTTTACAAAGAGACTATCCTTGTTGGGCATTCTATGGAAAATGATTTATTAGCATTGAAGATATCTCATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGATCATCTTATAAAACTGCTCTACGGTTTCTTGCTAAGAGATTTCTTTCAAGGGAGATACAGCAATCTGGGAATGGACACGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCACTATTAAAGATCAGAAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTATGCGGAGAAAGCTCCTTTCCATTTTGAGCGAATCTGGCAAAACTTCCTCATTGATTGATGATATATCCATAGTAAAACGATATGCCTCTGAATCCGCTCATGCAATTCCAGTGACCTCTGATGATGAAGCACTTGCAAAAACCAACAAGGAGTTGAAGAATGAAAAGGTGCACTTTATCTGGACTCAGTTTACAGAGTTACACTCATACTTCAAGAATCAAGCTGAAGAATCAGAGAACTTTAATAAAAGACTTGCAGAGATGATGTCATTACTTACATGTCAGAAGAATTTTGCAAAAGGGAAAGGCTTAAAGTTGAGTGCATCTGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAAACTGTATATGTCATTACCCGCAAATGCTATGTTGATAATTTGCACTGGTCATGGAGACACTGCGATTGTCCGCAGGCTGAGGAGAATGCTTGCTGAGCAGAGTGAAAGTAATTTATGTCGTGAGAAGATTGTGGAAATCTTGGAAGAGGTTCAGGCTAGAGCTGAGGTAGCCTTGTGTTTTGTAGGTGTAAAGAATTGA 1704 0.4014 MESSEGLEVKSEEDSTPNNKCSKFYDVYGPQGKADIVFKSPEDNSTLNLNDIQGLITWVLGEGFMPSWAFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPNFKKLCGKPRPVLALSCVSDGMQTIDALLTCKVKRKRDQNSSVMRKSTLISRQGCGCTDSLSFMELTKDIPFPVTYYTLTEKELEENGYSVNKPGFVSTLPAPLGSSFYEMLALDCEMCITSEGFELTRVTLVDVKGQVLMDKLVKPSNAITDYNTRYSGITSEMLDGVTTSLRDIQEEFLELVYKETILVGHSMENDLLALKISHDLVIDTAVLYKHPRGSSYKTALRFLAKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPDFGSPPSFMRRKLLSILSESGKTSSLIDDISIVKRYASESAHAIPVTSDDEALAKTNKELKNEKVHFIWTQFTELHSYFKNQAEESENFNKRLAEMMSLLTCQKNFAKGKGLKLSASAELKEILARMDARIHKLYMSLPANAMLIICTGHGDTAIVRRLRRMLAEQSESNLCREKIVEILEEVQARAEVALCFVGVKN 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1865g00008 567 CDD REX1_like 213 362 IPR034922 -
Gabi1865g00008 567 SMART exoiiiendus 211 370 IPR013520 -
Gabi1865g00008 567 FunFam RNA exonuclease NEF-sp 208 372 - -
Gabi1865g00008 567 Pfam Exonuclease 214 360 IPR013520 -
Gabi1865g00008 567 Gene3D - 209 369 IPR036397 GO:0003676
Gabi1865g00008 567 SUPERFAMILY Ribonuclease H-like 212 365 IPR012337 -
Gabi1865g00008 567 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 388 IPR047021 GO:0004527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1865g00008 Gabi-Chr1865 47719 55038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1865g00008 212 360 C2H2 Transcription Factor Family AT3G27970 28.824 8.20e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1865g00008 K14570 - gmx:100802793 959.518