Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1865g00006 ATGGAATCCTCAGAGGGGTTGGAGGTGAAAAGCGAAGAGGATTCTACGCCTAATAATAAATGTAGCAAGTTCTACGATGTCTATGGTCCCCAAGGGAAGGCAGATATTGTTTTCAAGTCACCTGAAGATAATTCAACTCTGAATCTTAATGACATTCAAGGACTTATAACTTGGGTCCTTGGTGAAGGATTTATGCCATCATGGGCTTTCATCAAGAATAAACCTCTTATTCCTAAAGTGGTTATGCTCTATATGCCAGGCCTGGATGCAGCTTTGTTCTTGTCACAGTCTAAAATGCTTCCCAATTTTAAAAAATTGTGCGGAAAACCAAGGCCAGTCCTAGCTCTTAGGTGTGTCTGTGTATCAGATGGTATGCAGACAATAGATGCACTCCTAACATGCAAGGTGAAAAGAAAGAGAGATCAAAATAGTTCAGTTATGAGGAAGTCTACCCTGATATCTCGACAAGGCTGTGGTTGTACTGACAGTCTATCATTTATGGAGCTTACAAAAGACATTCCTTTCCCTGTTACATACTATACACTAACAGAGAAAGAACTGGAAGAGAATGGATATTCTGTTAATAAGCCAGGCTTTGTTTCTACTTTGCCCGCTCCTTTGGGATCTTCTTTTTATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAGTGAGGGTTTTGAGCTGACAAGAGTTACTCTAGTGGATGTCAAAGGACAGGTTTTGATGGATAAATTGGTTAAACCTTCAAATGCTATCACTGATTACAACACAAGATATAGTGGAATAACATCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAAGAGTTTCTAGAGCTGGTTTACAAAGAGACTATCCTTGTTGGGCATTCTATGGAAAATGATTTATTAGCATTGAAGATATCTCATGACTTGGTCATTGACACAGCAGTATTATACAAACACCCCCGAGGATCATCTTATAAAACTGCTCTACGGTTTCTTGCTAAGAGATTTCTTTCAAGGGAGATACAGCAATCTGGGAATGGACACGACAGCATTGAAGATGCTAGAGCTACCATGGAATTGGCACTATTAAAGATCAGAAATGGGCCTGACTTTGGTTCCCCTCCATCCTTTATGCGGAGAAAGCTCCTTTCCATTTTGAGCGAATCTGGCAAAACTTCCTCATTGATTGATGATATATCCATAGTAAAACGATATGCCTCTGAATCCGCTCATGCAATTCCAGTGACCTCTGATGATGAAGCACTTGCAAAAACCAACAAGGAGTTGAAGAATGAAAAGGTGCACTTTATCTGGACTCAGTTTACAGAGTTACACTCATACTTCAAGAATCAAGCTGAAGAATCAGAGAACTTTAATAAAAGACTTGCAGAGATGATGTCATTACTTACATGTCAGAAGAATTTTGCAAAAGGGAAAGGCTTAAAGTTGAGTGCATCTGCTGAACTGAAGGAAATTCTGGCTCGCATGGATGCTAGAATTCATAAACTGTATATGTCATTACCCGCAAATGCTATGTTGATAATTTGCACTGGTCATGGAGACACTGCGATTGTCCGCAGGCTGAGGAGAATGCTTGCTGAGCAGAGTGAAAGTAATTTATGTCGTGAGAAGATTGTGGAAATCTTGGAAGAGGTTCAGGCTAGAGCTGAGGTAGCCTTGTGTTTTGTAGGTGTAAAGAATTGA 1710 0.4018 MESSEGLEVKSEEDSTPNNKCSKFYDVYGPQGKADIVFKSPEDNSTLNLNDIQGLITWVLGEGFMPSWAFIKNKPLIPKVVMLYMPGLDAALFLSQSKMLPNFKKLCGKPRPVLALRCVCVSDGMQTIDALLTCKVKRKRDQNSSVMRKSTLISRQGCGCTDSLSFMELTKDIPFPVTYYTLTEKELEENGYSVNKPGFVSTLPAPLGSSFYEMLALDCEMCITSEGFELTRVTLVDVKGQVLMDKLVKPSNAITDYNTRYSGITSEMLDGVTTSLRDIQEEFLELVYKETILVGHSMENDLLALKISHDLVIDTAVLYKHPRGSSYKTALRFLAKRFLSREIQQSGNGHDSIEDARATMELALLKIRNGPDFGSPPSFMRRKLLSILSESGKTSSLIDDISIVKRYASESAHAIPVTSDDEALAKTNKELKNEKVHFIWTQFTELHSYFKNQAEESENFNKRLAEMMSLLTCQKNFAKGKGLKLSASAELKEILARMDARIHKLYMSLPANAMLIICTGHGDTAIVRRLRRMLAEQSESNLCREKIVEILEEVQARAEVALCFVGVKN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1865g00006 569 Gene3D - 211 371 IPR036397 GO:0003676
Gabi1865g00006 569 CDD REX1_like 215 364 IPR034922 -
Gabi1865g00006 569 Pfam Exonuclease 216 362 IPR013520 -
Gabi1865g00006 569 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 25 390 IPR047021 GO:0004527
Gabi1865g00006 569 SUPERFAMILY Ribonuclease H-like 214 367 IPR012337 -
Gabi1865g00006 569 SMART exoiiiendus 213 372 IPR013520 -
Gabi1865g00006 569 FunFam RNA exonuclease NEF-sp 210 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1865g00006 Gabi-Chr1865 47719 55038 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1865g00006 214 362 C2H2 Transcription Factor Family AT3G27970 28.824 7.61e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1865g00006 K14570 - gmx:100802793 952.584