Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1865g00005 ATGTCTCGGTCGTTGGTGCAGCCGATAGGGCAGAAGAAACTAACGAACGTGGCGGTGGTGCGTCTGAAGAAGCACGGCATGCGTTTCGAGATCGCTTGTTACCCTAACACCGTCCTTTCTTGGCGTTCCGGCGTGGAGAAGGACATCGATGAAGTGGTGCAGTCTCACACCGTTTATACCAATGTTTCGAAAGGGGTTCTGGCCAAGTCTAAGGATTTGAACGCAGCGTTTGGGACAGATGACCACTCCAAGATATGCCTAGAGATTTTGAAGAAAGGGGAACTTCAGGTTGCTGGGAAAGAGAGGGAATCGATGCTGTCAAATCAGTTCAGGGACATTGCTACAATTGTGATGCACAAAACTTACAATCCAGAGACTCAGCGCCCTTACACTATCAGCATGATCGAACGTCTCATGAGGGAAATCCATTTCGCTGTTGATCCAAACAGCACCTCCAAGAAGCAGGCTCTGGAGTTGATTCAAGAGCTTCAAAAGCACTACCCTATAAAACGGTGTCCGTTGAGAATAAGAGCTGCTGCTCCTGAGGACCAAATCCCTTCCCTTCTAGAAAAGCTTAATGAGTGGAAGGCAACTGTTCTTTCTAAAGAAGGATCTGCTGCTCAGTTATCTGTTGTTTTTGAATTGGAACCTGGTCTATATAAGGATTGTCATGACTTTGTTATGAATACCATGCATGGAAGATTTGAAGTTCTTGCACACTCTCTATATCTGGAGGGAGATACCCATGTGGAGCAATACAATGAGCATGAGGATATGCCTGCCCCATTGCCCAAAGAAACTCGGGAATCTGTGCTTGAACTGAATGATAAACTTCAAAAGCAAACAATTTCATCTACGAGTAGCCCTAGTGAGGCACAACAACAAAAGCAAAACAAGTGCAACACATGCAATGTTTCTTTTGAAGACTCTAAGCTGTACAGAGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGTAAGACAAGGCAACTCCCACCACTTACTGAGGAAGAGTGCGTGGCAGACATGGAATTGGGTGACTCAAAATCTGATTTGAAGGATTATTCATTTTGA 1080 0.4519 MSRSLVQPIGQKKLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVVQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSKICLEILKKGELQVAGKERESMLSNQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRIRAAAPEDQIPSLLEKLNEWKATVLSKEGSAAQLSVVFELEPGLYKDCHDFVMNTMHGRFEVLAHSLYLEGDTHVEQYNEHEDMPAPLPKETRESVLELNDKLQKQTISSTSSPSEAQQQKQNKCNTCNVSFEDSKLYREHHKSEWHKHNMKRKTRQLPPLTEEECVADMELGDSKSDLKDYSF 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1865g00005 359 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Gabi1865g00005 359 ProSitePatterns Zinc finger C2H2 type domain signature. 300 322 IPR013087 -
Gabi1865g00005 359 NCBIfam ribosome assembly factor SBDS 13 229 IPR002140 GO:0042256
Gabi1865g00005 359 Gene3D - 1 96 IPR036786 -
Gabi1865g00005 359 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Gabi1865g00005 359 MobiDBLite consensus disorder prediction 281 300 - -
Gabi1865g00005 359 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 246 IPR039100 -
Gabi1865g00005 359 Gene3D - 174 251 - -
Gabi1865g00005 359 FunFam SBDS, ribosome maturation factor 3 96 - -
Gabi1865g00005 359 FunFam SBDS, ribosome maturation factor 100 172 - -
Gabi1865g00005 359 Gene3D Classic Zinc Finger 288 347 - -
Gabi1865g00005 359 MobiDBLite consensus disorder prediction 318 359 - -
Gabi1865g00005 359 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Gabi1865g00005 359 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Gabi1865g00005 359 MobiDBLite consensus disorder prediction 344 359 - -
Gabi1865g00005 359 SUPERFAMILY beta-beta-alpha zinc fingers 292 345 IPR036236 -
Gabi1865g00005 359 Gene3D - 100 172 IPR037188 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1865g00005 27 359 C2H2 Transcription Factor Family AT1G43860 58.551 1.71e-144 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi1865g00005 SBDS_C 5.2e-28 CL0437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1865g00005 K14574 - gmx:100797497 651.358