Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1863g00018 ATGGTGAATCAGGGTGAACCGGCGAAGCTGCGGTGGGGGGAGCTGGAGGAGGACGACGGAGAGGATCTCGATTTCTTGTTACCACCTCGGCAGGTGATTGGGCCCTACGAAAACGGAATAAAAAAGGTTATGGAGTACAAGTTCGACGAGGACGGAAACAAGGTCAAGATTACCACCACAACGCGCACCCGCAAACTCGCCAACGCGCGTCTCAGCAAACGCGCGGTCGAGAGGCGCTTCTGGCCCAAGTTCGGCGAGGCCGTTGATGAAGACGTTGGTAGCAAACTCACCATGGTCTCCACCGAAGAGATCCTCCTCGAGCGTCCGAAGCCTCTTGGTGCAAAAACAGACGAGCCAAAGGTTGCTGGAGACCCATTGGCTCAATTTCAAAAGGGTGCTGTTCTTATGGTTTGTAGGACATGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGCCCGTACAAGGATCTTGCCCCACCATCTGAGGGATTCATCGATAAGCCTGCGGCAGCAGATGTTGCGGCCGGCGCCACGAATGGTTCAACCAAGGGAGCATATGTACCTCCTGGTATGAGAGCGGGTGCAGAAAGGACCAGTGGATCAGACATGTGGCGTAGGAACGATGGGAATTCTGTACGAGTAACCAACCTCTCAGAGGACACAAGAGAGCCTGATTTGCTTGAGCTTTTCCGTCCTTTTGGTCCTGCGAGCAGAGTCTATGTTGCCATTGATCAGAAGACTGGTATGAGCAGGGGATTTGGCTTTGTTAACTTTGTCAACAGGGAAGATGCTCAAAGAGCTATCAACAAACTCAATGGATATGGCTACGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCAAGGACAAACTAA 876 0.5228 MVNQGEPAKLRWGELEEDDGEDLDFLLPPRQVIGPYENGIKKVMEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRFWPKFGEAVDEDVGSKLTMVSTEEILLERPKPLGAKTDEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFIDKPAAADVAAGATNGSTKGAYVPPGMRAGAERTSGSDMWRRNDGNSVRVTNLSEDTREPDLLELFRPFGPASRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1863g00018 291 PIRSF Transl_init_eIF-3_RNA-bind 1 291 IPR017334 GO:0003743|GO:0005737|GO:0005852
Gabi1863g00018 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 25 287 - -
Gabi1863g00018 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Gabi1863g00018 291 Gene3D - 177 291 IPR012677 -
Gabi1863g00018 291 SMART rrm1_1 211 284 IPR000504 GO:0003723
Gabi1863g00018 291 FunFam Eukaryotic translation initiation factor 3 subunit G 174 291 - -
Gabi1863g00018 291 Pfam Eukaryotic translation initiation factor 3 subunit G 31 157 IPR024675 -
Gabi1863g00018 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 278 IPR000504 GO:0003723
Gabi1863g00018 291 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 9 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Gabi1863g00018 291 SUPERFAMILY RNA-binding domain, RBD 197 290 IPR035979 GO:0003676
Gabi1863g00018 291 CDD RRM_eIF3G_like 211 286 IPR034240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1863g00018 Gabi-Chr1863 204772 206756 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1863g00018 3 289 Eukaryotic Initiation Factors Gene Family AT3G11400 66.246 1.52e-145 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1863g00018 K03248 - gmx:100818725 528.48