Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1863g00017 ATGGTGATAGATAACAAAGGTGAACCGGCGAAGCTGCGGTGGGGGGAGCTGGAGGAGGACGACGGAGAGGATCTCGATTTCTTGTTACCACCTCGGCAGGTGATTGGGCCCTACGAAAACGGAATAAAAAAGGTTATGGAGTACAAGTTCGACGAGGACGGAAACAAGGTCAAGATTACCACCACAACGCGCACCCGCAAACTCGCCAACGCGCGTCTCAGCAAACGCGCGGTCGAGAGGCGCTTCTGGCCCAAGTTCGGCGAGGCCGTTGATGAAGACGTTGGTAGCAAACTCACCATGGTCTCCACCGAAGAGATCCTCCTCGAGCGTCCGAAGCCTCTTGGTGCAAAAACAGACGAGCCAAAGGTTGCTGGAGACCCATTGGCTCAATTTCAAAAGGGTGCTGTTCTTATGGTTTGTAGGACATGTGGGAAGAAGGGTGACCATTGGACTTCAAGGTGCCCGTACAAGGATCTTGCCCCACCATCTGAGGGATTCATCGATAAGCCTGCGGCAGCAGATGTTGCGGCCGGCGCCACGAATGGTTCAACCAAGGGAGCATATGTACCTCCTGGTATGAGAGCGGGTGCAGAAAGGACCAGTGGATCAGACATGTGGCGTAGGAACGATGGGAATTCTGTACGAGTAACCAACCTCTCAGAGGACACAAGAGAGCCTGATTTGCTTGAGCTTTTCCGTCCTTTTGGTCCTGCGAGCAGAGTCTATGTTGCCATTGATCAGAAGACTGGTATGAGCAGGGGATTTGGCTTTGTTAACTTTGTCAACAGGGAAGATGCTCAAAGAGCTATCAACAAACTCAATGGATATGGCTACGACAATCTCATCCTTAGAGTTGAATGGGCCACCCCAAGGACAAACTAA 882 0.5193 MVIDNKGEPAKLRWGELEEDDGEDLDFLLPPRQVIGPYENGIKKVMEYKFDEDGNKVKITTTTRTRKLANARLSKRAVERRFWPKFGEAVDEDVGSKLTMVSTEEILLERPKPLGAKTDEPKVAGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFIDKPAAADVAAGATNGSTKGAYVPPGMRAGAERTSGSDMWRRNDGNSVRVTNLSEDTREPDLLELFRPFGPASRVYVAIDQKTGMSRGFGFVNFVNREDAQRAINKLNGYGYDNLILRVEWATPRTN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1863g00017 293 PIRSF Transl_init_eIF-3_RNA-bind 4 293 IPR017334 GO:0003743|GO:0005737|GO:0005852
Gabi1863g00017 293 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 27 289 - -
Gabi1863g00017 293 Pfam Eukaryotic translation initiation factor 3 subunit G 33 159 IPR024675 -
Gabi1863g00017 293 SUPERFAMILY RNA-binding domain, RBD 199 292 IPR035979 GO:0003676
Gabi1863g00017 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Gabi1863g00017 293 FunFam Eukaryotic translation initiation factor 3 subunit G 176 293 - -
Gabi1863g00017 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 280 IPR000504 GO:0003723
Gabi1863g00017 293 SMART rrm1_1 213 286 IPR000504 GO:0003723
Gabi1863g00017 293 Gene3D - 179 293 IPR012677 -
Gabi1863g00017 293 CDD RRM_eIF3G_like 213 288 IPR034240 -
Gabi1863g00017 293 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 11 292 IPR017334 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1863g00017 Gabi-Chr1863 204772 208137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1863g00017 1 291 Eukaryotic Initiation Factors Gene Family AT3G11400 66.044 2.44e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1863g00017 K03248 - gmx:100818725 525.013