Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1863g00012 ATGAATGAGGAACCACCTCCGGCGATTCTCATGTCGCTTTCTTGCATCTCCGACTACGACCTCCTCTGCCGCGAGGATACCTCCGGAATCCTTTCGGTAGAGTCGCCGGAATGCTCCTCCGACCTCGATTCCTCTCTGCTTTCGTCGTCGTCTTCCTCCTCATCGACGGAGGAGTCCATCGCTTGTTTCATCGAGCACGAACGCAACTTCGTTCCCGGTTTCAACTACTTGTCAAGATTCCAATCTCGCTCTCTAGACGTCAACGCCAGAGAAGAATCCGTTGCATGGATTCTCAAGGTACACGCGTACTACGGCTTTCGGCCACTGACGGCGTACCTTTCCGTCAATTATATGGATCGGTTCTTGGATTCTGGCCGGTTGCCGCAAACAAATGGGTGGCCTCTGCAACTTCTATCTGTTACATGTTTGTCTTTAGCTGCAAAGATGGAGGAACCTCTGGTTCCGTCTCTCTTGGACCTTCAGGTAGAAGGTGCCAAATACATATTTGAATCTAGAACGATTGGTAGGATGGAGCTACTTGTTCTGGCTGTCTTGGATTGGAGGCTAAGATCAGTCACCCCACTTAGCTTCCTCGGTTTCTTTGCGTGCAAGCTAGATTCAACTGGTACTTTTACTGGATTCCTCATTTCACGGGCTACAGAAATCATCTTATCTAATATCCAAGAGGCTAGCTTTCTTGCTTACAGGCCATCATGCATTGCTGCAGCAGCCATACTCTCTGCAGCCAATGAGATTCCTAATTGGTCTCTCGCTAAGCCTGAGCATGCTGAGTCATGGTGCGAGGGCCTAAGAAAAGAAAAAATCATAGGGTGCTACCAGTTGATGCAAGAACTTGTGATAAACAATAACCGCAGCAGGAAGCCCTCTAAAGTGTTGCCACAGTTGCGAGTAACAACTCTGAACCGAATAAGGTCAAGTGTCTCATCATCCCCATCGTCCTCCTCTTCATCCTCCTTCTCATCCTCTTATAAAAGGAGGAAATTAAATAACTGTTTGTGGGCAGATGATGACAAAGGAAACTCCGAGTGA 1050 0.481 MNEEPPPAILMSLSCISDYDLLCREDTSGILSVESPECSSDLDSSLLSSSSSSSSTEESIACFIEHERNFVPGFNYLSRFQSRSLDVNAREESVAWILKVHAYYGFRPLTAYLSVNYMDRFLDSGRLPQTNGWPLQLLSVTCLSLAAKMEEPLVPSLLDLQVEGAKYIFESRTIGRMELLVLAVLDWRLRSVTPLSFLGFFACKLDSTGTFTGFLISRATEIILSNIQEASFLAYRPSCIAAAAILSAANEIPNWSLAKPEHAESWCEGLRKEKIIGCYQLMQELVINNNRSRKPSKVLPQLRVTTLNRIRSSVSSSPSSSSSSSFSSSYKRRKLNNCLWADDDKGNSE 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1863g00012 349 SMART cyclin_7 95 183 IPR013763 -
Gabi1863g00012 349 CDD CYCLIN_AtCycD-like_rpt1 89 187 - -
Gabi1863g00012 349 SUPERFAMILY Cyclin-like 193 292 IPR036915 -
Gabi1863g00012 349 ProSitePatterns Cyclins signature. 90 121 IPR006671 -
Gabi1863g00012 349 Gene3D - 64 254 - -
Gabi1863g00012 349 PANTHER CYCLINS 57 290 IPR039361 -
Gabi1863g00012 349 CDD CYCLIN_AtCycD-like_rpt2 192 282 - -
Gabi1863g00012 349 FunFam D2/4-type cyclin 73 190 - -
Gabi1863g00012 349 SUPERFAMILY Cyclin-like 56 189 IPR036915 -
Gabi1863g00012 349 Gene3D - 73 190 - -
Gabi1863g00012 349 SMART Cyclin_C_2 192 330 IPR004367 -
Gabi1863g00012 349 Pfam Cyclin, N-terminal domain 60 189 IPR006671 -
Gabi1863g00012 349 Pfam Cyclin, C-terminal domain 192 312 IPR004367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1863g00012 Gabi-Chr1863 156301 159964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1863g00012 11 348 Core Cell Cycle Gene Families AT1G70210 61.176 1.53e-131 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1863g00012 K18810 - gmx:100778578 528.865