Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1862g00014 ATGCCTTCTCTCCTTCCTCTCTCCAACGACGCCGTTCCGAGCGAGGGCTCCAAAGACAAGACGAAGAAGAAGAAGAAGGAGGAGAAGAATAAGAACCAGGCTCCAAACGACGCCGTTCCCGAACTGGACTTGCTGAGTTCGAAGAACAAGAGCAAGAAGCGCAAGAAGGGTTCGGATGAAGATGAAAAAGGGGAGGAGGTGAAGAGCGAGACAAGCTCGGAGCTCGTGGATCCCAACGAGGAAGGTTTGAGATCGAAAGAGAAGAAGAATAAGAAGAAGAAAGCGAAGTTTGAGGAGGAAGAGGAAGAAGTGGTTGTGAAGAAGGAGGATCGGAATGCGATTTCCAAGTTTAGGATATCAGAGCCGTTGAAGGCGAAGCTGAAGGAGAAAGGGATCGAATCGTTGTTTCCGATTCAGGCCATGACCTTCGATATCGTCCTTGATGGTTGCGATTTGGTTGGTCGCGCTCGTACCGGTCAGGGTAAAACTCTGGCCTTTGTGTTACCCATATTAGAGTCTCTAACAAATGGTCCAGCTAAAGCGGTGAGAAAGGTTGGCTATGGGAGGTCTCCTAGTGTCATTGTGCTTTTACCTACTAGGGAATTGGCTAATCAGGTGCATGCTGATTTTGAAGTTTATGGTTCGTCAATGGGACTGGCTTCTTGCTGTTTATATGGTGGAGCTCCGTATCAAGCTCAAGAGATGAAGCTCAAAAGAGGTGTTGATATTGTTGTTGGAACACCAGGTCGTATAAAGGATCATATAGAGAGGCAAAATATTGACCTGAGCCAACTGAAGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAGCTCATTCTAGGTAAGGTAGAAGATGTTAGAAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAGCAAATTTCTGCGAAATTTCTGAAACCAGATAAGAAAACTGCTGATCTTGTTGGGAATGAGAAAATGAAGGCTAGTACTAATGTGAGGCATATTGTTCTTCCATGTAATAGTACTGCCAGGTCCCAACTTATCCCCGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCTGAGAAAAAAGAGTCTGCCTCTGAGCTTGCGGGGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAACAGTCACAACGTGAGGTTACATTGTCCGGTTTTAGGTCAGGGAAATTCATGACATTGGTGGCCACAAATGTGGCAGCTCGGGGTCTAGATATTAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCCTATATTCATCGTTCTGGGCGCACAGGAAGAGCTGGTAATACTGGAGTTGCTGTTATGCTTTTTGATCCCAGAAGGTCGAATATATCTAAAATTGAAAGAGAATCGGGTGTGAAATTTGAACACGTATCTGCTCCTCAGCCTGGTGATATTGCCAATGCTGTTGGTGGGGAAGCTGCTGATATGATTACCCAAGTGTCTGATAGTGTTATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTAAACAACTCTGGTTTATCAGCTGTTGAGTTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTTTACGGAGATAAAGAAAAGATCACTTCTGACTTCCATGGAGAATTATGTTACATTACATCTTGAGATTGGAAAACCTATCTTCACCCCATCCTTTGCATTTGGAGTTCTGAGGAGATTTGTGCCTGAGGAGAAGGTTGATGCAGTGCAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTACCAGCCAAAGATTTAGATTCATTTCTTACTGGTCAGCAGAATGCTGCTAATGTAAGCCTAGAGGTGTTAAAAGCATTGCCACTTTTGCAAGAAAGAGACCAATCAAAAGGAGGCAGATTTGGTGGTGGGAATAGGTTTTCAGGTGGCAGGAATGGTAGATTTTCAAGTCAGAATAATAGGTTTTCAAATGGTTTCAGTGGTGGGAGAGGTAACGGAAACAGAGGGGGAAAGAGATGGTAA 2073 0.4472 MPSLLPLSNDAVPSEGSKDKTKKKKKEEKNKNQAPNDAVPELDLLSSKNKSKKRKKGSDEDEKGEEVKSETSSELVDPNEEGLRSKEKKNKKKKAKFEEEEEEVVVKKEDRNAISKFRISEPLKAKLKEKGIESLFPIQAMTFDIVLDGCDLVGRARTGQGKTLAFVLPILESLTNGPAKAVRKVGYGRSPSVIVLLPTRELANQVHADFEVYGSSMGLASCCLYGGAPYQAQEMKLKRGVDIVVGTPGRIKDHIERQNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVRKVQTLLFSATLPSWVKQISAKFLKPDKKTADLVGNEKMKASTNVRHIVLPCNSTARSQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFDPRRSNISKIERESGVKFEHVSAPQPGDIANAVGGEAADMITQVSDSVIPAFKSAAEELLNNSGLSAVELLAKALAKAVGFTEIKKRSLLTSMENYVTLHLEIGKPIFTPSFAFGVLRRFVPEEKVDAVQGLTLTADGNGAVFDVPAKDLDSFLTGQQNAANVSLEVLKALPLLQERDQSKGGRFGGGNRFSGGRNGRFSSQNNRFSNGFSGGRGNGNRGGKRW 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1862g00014 690 Pfam GUCT (NUC152) domain 546 641 IPR012562 GO:0003723|GO:0004386|GO:0005524
Gabi1862g00014 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 190 469 IPR027417 -
Gabi1862g00014 690 Gene3D - 564 635 - -
Gabi1862g00014 690 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 325 IPR014001 -
Gabi1862g00014 690 SMART ultradead3 131 343 IPR014001 -
Gabi1862g00014 690 FunFam DEAD-box ATP-dependent RNA helicase 7 563 635 - -
Gabi1862g00014 690 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Gabi1862g00014 690 Coils Coil 83 110 - -
Gabi1862g00014 690 CDD DEADc 123 320 - -
Gabi1862g00014 690 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 55 523 - -
Gabi1862g00014 690 Gene3D - 336 563 IPR027417 -
Gabi1862g00014 690 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 354 496 IPR001650 -
Gabi1862g00014 690 MobiDBLite consensus disorder prediction 645 690 - -
Gabi1862g00014 690 Pfam Helicase conserved C-terminal domain 359 457 IPR001650 -
Gabi1862g00014 690 CDD GUCT_RH7_like 553 638 - -
Gabi1862g00014 690 CDD SF2_C_DEAD 340 466 - -
Gabi1862g00014 690 MobiDBLite consensus disorder prediction 15 34 - -
Gabi1862g00014 690 MobiDBLite consensus disorder prediction 660 680 - -
Gabi1862g00014 690 SUPERFAMILY RNA-binding domain, RBD 550 633 IPR035979 GO:0003676
Gabi1862g00014 690 Gene3D - 59 325 IPR027417 -
Gabi1862g00014 690 MobiDBLite consensus disorder prediction 1 102 - -
Gabi1862g00014 690 SMART helicmild6 380 457 IPR001650 -
Gabi1862g00014 690 MobiDBLite consensus disorder prediction 53 102 - -
Gabi1862g00014 690 Pfam DEAD/DEAH box helicase 136 313 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1862g00014 Gabi-Chr1862 135233 140185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1862g00014 90 463 Eukaryotic Initiation Factors Gene Family AT1G72730 29.474 7.26e-41 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1862g00014 K16911 - qsa:O6P43_008295 930.243