LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1858g00001	ATGACCCTGAAACTCTCCAAAAGGTTGCAATTGAAAAACCCAGATGGCCCAAATGCTGTTATTGATCTTCTCAGGAACTATGGGTTCTCGCGGACCCAATTATCAATCCTTGTCAAGAAAAAACCTTTTCTGCTTTTTGCAAAACCTGAGGAAACCCTTTTGCCAAAACTCATGTTCTTCCATTCTATTGGGTTTTCAACAACTGACCTCCCCAGAATATTCATTGGAAACCCTTCATTTTTACACACAAGCTTGAAGAACAACATTATACCTCGTTATGAGATCATCAGGAGTCTACTACGCAGTGATAAGGAAGTAGTTTCAACTTTGAAGCATGTGGGATGGAGCTTTCGCAGTTGTGCGGTAATAACTGATTCAGTTGCAAACATAGAGGCTTTGAGACAGCTTGGCCTTCCTCAAGGTTCCATTTCTCTCCTGGTAACCAATTTTCCTCGTGTGGCATTCATGAAGCATTCGAGATTTGTTGAGGCTGTCGAGACAGTGAAGGAAATGGGGTTTGATACTTTGAAATCAAATTTTGTTTTAGCACTTCAAGTACTTGCAAAGATGAATAAAGCAATGTGGAAGTTGAGAGTAGAGGTTTTTGAGAGGTGGGGCTGGTCTAAAGATATCTGTCTTCTAGCTTTCAAAAAGAATCCCCAGTGTATGATGCTGTCAGAAAAGAAGGTTATGAAGATACTAAGCTTCTTGGTGAAGGATATGGGTTTTCCCTCAGAAGACATTGCTGGATGCCCTGTGATTCTTAATCGCAACTTGGAAAAAACATTGATCCCTAGATGTGCAGTTGTTGAAATTTTGAAATCAAGGGGTTTGATCAAGAGAGATTTGCGCATAACTAGCTTTATGTCGATTAGTGAGAAAAAGTTTTTGGCGAGATATGTGACCCGATTTCAGAAAAAAGTGCCACAACTGTTGGATGCATACAAAGGTCAGAAGTCAGATAGATCATCTTGA	975	0.4021	MTLKLSKRLQLKNPDGPNAVIDLLRNYGFSRTQLSILVKKKPFLLFAKPEETLLPKLMFFHSIGFSTTDLPRIFIGNPSFLHTSLKNNIIPRYEIIRSLLRSDKEVVSTLKHVGWSFRSCAVITDSVANIEALRQLGLPQGSISLLVTNFPRVAFMKHSRFVEAVETVKEMGFDTLKSNFVLALQVLAKMNKAMWKLRVEVFERWGWSKDICLLAFKKNPQCMMLSEKKVMKILSFLVKDMGFPSEDIAGCPVILNRNLEKTLIPRCAVVEILKSRGLIKRDLRITSFMSISEKKFLARYVTRFQKKVPQLLDAYKGQKSDRSS	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1858g00001	324	Pfam	mTERF	21	175	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	Pfam	mTERF	191	297	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	PANTHER	CGI-12 PROTEIN-RELATED	4	303	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	SMART	mt_12	213	244	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	SMART	mt_12	245	279	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	SMART	mt_12	35	66	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	SMART	mt_12	144	174	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	SMART	mt_12	71	102	IPR003690	GO:0003690\|GO:0006355
	Gabi1858g00001	324	FunFam	Mitochondrial transcription termination factor-like	85	308	-	-
	Gabi1858g00001	324	Gene3D	Transcription termination factor 3, mitochondrial	102	308	IPR038538	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1858g00001	Gabi-Chr1858	13205	14179	Dispersed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	mTERF	Gabi1858g00001		mTERF	1.2e-23	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1858g00001	K15031		-	gmx:106799612	425.631