Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1841g00017 ATGAATAAATTCCACGAGGTGACTGCTCAGTTGGAACAAGCGTTGGGTGGAATTTCCTATGATAAACTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTTGCCCAGTTCACGAGAGCCAAAGGAAGGGTTGATGCACCTGATATTGAGTTGTATGAGGATCTCTTGTCCCTCTACGACAAGACCAGTGATGCAGCAACAGATTCATCTGTTATACGGAGATTAGCTGAAAAATTGCAATTGAATGGAATAGTTGATCTTACACAAGAGTCAGTAGCTTTGCATGAGATGGTGGCTGCCAGTGGTGGGGATCCAGGGTCAAGCATTGAGAAGATGTCAATTTTATTGAAGAAGATAAAGGAGAGCGCTCAAACAGAAAATCTAGACGTGGATGATAATGTAGGAGGAAACAGCCTCTCTTCAAGTTGTTGTAAACAGGGGAAAAATGAAATGAATCACCAGCCCCCTGCAATCCCTGATGATTTTCGATGTCCAATTTCCCTAGAATTGATGAAGGATCCTGTCATTGTATCAACTGGACAGACTTATGAGCGTTCTTGTATAGAGAAGTGGTTGGAAGCAGGGCATGGGACATGCCCAAAAACACAGCAGACCCTCTCTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATAGCACAATGGTGTGAGGTCAATGGCATAGAACCACCAAAACGACCCAGCAGTTCTCGACTTAGTAAATCAGCATCTACCTGTTCACCAGCTGAGCGAAGTAAGATTGAAAATCTTCTTCAAAAGCTCACATCTGGCAATCCTGAAGACCAGAGATCAGCTGCGGGTGAGATCCGCCTTCTTGCGAAGCGAAATGCAGATAACCGTGTGGCTATTGCTGAAGCTGGTGCAATACCTCTTCTTGTTGGTCTTCTCTGTATGCCGGACTCCCGCATTCAAGAGCATGCTGTGACAGCACTTCTGAATCTTTCAATATGTGAAAATAACAAAGGAAGTATCATATCTGCAGGGGCAGTTCCAGGTATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAACGCGGCAGCAACTCTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATAGGTTCTTCAGGAGCCATACCACCACTAGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTTTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAGTGAGGGCTGGTGTTATTCCAACGCTGATGCGACTGCTGACAGAACCTGGTGGGGGAATGGTTGATGAAGCATTAGCCATATTGGCAATATTGGCTAGCCATCCTGATGGGAAGGCCGCCATTCGCTCTGCAGAGGCAGTGCCTGTTTTGGTAGAGGTGATTGGGAATGGATCCCCAAGAAACAAAGAGAATGCAGCTGCCGTCTTAGTGCACCTTTGTTCTGGTGATCAACAATATCTAGCTCAGGCTCATGAGCTAGGGGTGAATGGTCCATTGTTGGAATTAGCTCAGAATGGAACTGACAGAGGCAAAAGAAAAGCTGCACAATTGCTTGAGCGTATGAGCAGGTTCCTTGAGCAGCAGCAGCAGCATGAGGAAGAAGTTCAAACACAAACTGAGCTTCAAGCTCAGAGCCAGGATAACGCACTACCTTCTATTACTAACCTTGATGATAGCTGA 1713 0.4565 MNKFHEVTAQLEQALGGISYDKLDISDEVKEQVELVLAQFTRAKGRVDAPDIELYEDLLSLYDKTSDAATDSSVIRRLAEKLQLNGIVDLTQESVALHEMVAASGGDPGSSIEKMSILLKKIKESAQTENLDVDDNVGGNSLSSSCCKQGKNEMNHQPPAIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTVLTPNYVLRSLIAQWCEVNGIEPPKRPSSSRLSKSASTCSPAERSKIENLLQKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCMPDSRIQEHAVTALLNLSICENNKGSIISAGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILASHPDGKAAIRSAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAHELGVNGPLLELAQNGTDRGKRKAAQLLERMSRFLEQQQQHEEEVQTQTELQAQSQDNALPSITNLDDS 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1841g00017 570 FunFam RING-type E3 ubiquitin transferase 161 234 - -
Gabi1841g00017 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 422 464 IPR000225 GO:0005515
Gabi1841g00017 570 PANTHER U BOX DOMAIN-CONTAINING 2 534 - -
Gabi1841g00017 570 ProSiteProfiles U-box domain profile. 160 234 IPR003613 GO:0004842|GO:0016567
Gabi1841g00017 570 FunFam RING-type E3 ubiquitin transferase 244 395 - -
Gabi1841g00017 570 Pfam U-box domain 161 231 IPR003613 GO:0004842|GO:0016567
Gabi1841g00017 570 Pfam Neurochondrin 423 541 IPR008709 -
Gabi1841g00017 570 MobiDBLite consensus disorder prediction 542 570 - -
Gabi1841g00017 570 SUPERFAMILY RING/U-box 150 237 - -
Gabi1841g00017 570 Coils Coil 525 545 - -
Gabi1841g00017 570 MobiDBLite consensus disorder prediction 537 570 - -
Gabi1841g00017 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 234 IPR013083 -
Gabi1841g00017 570 SUPERFAMILY ARM repeat 259 543 IPR016024 -
Gabi1841g00017 570 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 299 341 IPR000225 GO:0005515
Gabi1841g00017 570 SMART arm_5 329 369 IPR000225 GO:0005515
Gabi1841g00017 570 SMART arm_5 452 492 IPR000225 GO:0005515
Gabi1841g00017 570 SMART arm_5 288 328 IPR000225 GO:0005515
Gabi1841g00017 570 SMART arm_5 411 451 IPR000225 GO:0005515
Gabi1841g00017 570 SMART arm_5 370 410 IPR000225 GO:0005515
Gabi1841g00017 570 FunFam RING-type E3 ubiquitin transferase 435 554 - -
Gabi1841g00017 570 Gene3D - 242 566 IPR011989 -
Gabi1841g00017 570 Pfam Armadillo/beta-catenin-like repeat 288 327 IPR000225 GO:0005515
Gabi1841g00017 570 Pfam Armadillo/beta-catenin-like repeat 371 409 IPR000225 GO:0005515
Gabi1841g00017 570 CDD RING-Ubox_PUB 162 214 IPR045210 -
Gabi1841g00017 570 SMART Ubox_2 164 227 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1841g00017 Gabi-Chr1841 242513 247667 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1841g00017 2 547 U-box Gene Family AT3G46510 72.842 0.0 800
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1841g00017 - - gmx:100812160 897.116