Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1841g00016 ATGGAGGTTGAAAAGGAAGCCACAGCTGAGAGCCTGATTGAGTTGGTGAGTGAGATATCGGCGATCTCAGATTACAGGTCGACGGTGAAGAAAGAGTACTGCAACCTGGTGCGGAGGCTGAAGCTATTGACCCCATTGTTCGAAGAGATTAGGGATAGCAATAAGCCAATCCCTGAGGAGACTTCAACGGCCATGTTTTCCTTGAAGAAAGCTATGGAATCGGCCAAGGAACTCCTCAGATTCGGGAGTGAAGGAAGCAAGATTTACATGGTTCTTGAGAGGGACCAAATTATGAATAAATTCCACGAGGTGACTGCTCAGTTGGAACAAGCGTTGGGTGGAATTTCCTATGATAAACTTGACATATCTGATGAAGTTAAGGAGCAGGTTGAGCTTGTTCTTGCCCAGTTCACGAGAGCCAAAGGAAGGGTTGATGCACCTGATATTGAGTTGTATGAGGATCTCTTGTCCCTCTACGACAAGACCAGTGATGCAGCAACAGATTCATCTGTTATACGGAGATTAGCTGAAAAATTGCAATTGAATGGAATAGTTGATCTTACACAAGAGTCAGTAGCTTTGCATGAGATGGTGGCTGCCAGTGGTGGGGATCCAGGGTCAAGCATTGAGAAGATGTCAATTTTATTGAAGAAGATAAAGGAGAGCGCTCAAACAGAAAATCTAGACGTGGATGATAATGTAGGAGGAAACAGCCTCTCTTCAAGTTGTTGTAAACAGGGGAAAAATGAAATGAATCACCAGCCCCCTGCAATCCCTGATGATTTTCGATGTCCAATTTCCCTAGAATTGATGAAGGATCCTGTCATTGTATCAACTGGACAGACTTATGAGCGTTCTTGTATAGAGAAGTGGTTGGAAGCAGGGCATGGGACATGCCCAAAAACACAGCAGACCCTCTCTAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTCATAGCACAATGGTGTGAGGTCAATGGCATAGAACCACCAAAACGACCCAGCAGTTCTCGACTTAGTAAATCAGCATCTACCTGTTCACCAGCTGAGCGAAGTAAGATTGAAAATCTTCTTCAAAAGCTCACATCTGGCAATCCTGAAGACCAGAGATCAGCTGCGGGTGAGATCCGCCTTCTTGCGAAGCGAAATGCAGATAACCGTGTGGCTATTGCTGAAGCTGGTGCAATACCTCTTCTTGTTGGTCTTCTCTGTATGCCGGACTCCCGCATTCAAGAGCATGCTGTGACAGCACTTCTGAATCTTTCAATATGTGAAAATAACAAAGGAAGTATCATATCTGCAGGGGCAGTTCCAGGTATAGTTCATGTGCTCAAGAAGGGAAGCATGGAAGCTCGGGAAAACGCGGCAGCAACTCTTTTCAGCCTTTCAGTTATAGATGAAAATAAGGTTACAATAGGTTCTTCAGGAGCCATACCACCACTAGTGACACTGCTGAGCGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACAGCACTTTTCAATTTGTGCATTTACCAGGGTAACAAGGGAAAGGCAGTGAGGGCTGGTGTTATTCCAACGCTGATGCGACTGCTGACAGAACCTGGTGGGGGAATGGTTGATGAAGCATTAGCCATATTGGCAATATTGGCTAGCCATCCTGATGGGAAGGCCGCCATTCGCTCTGCAGAGGCAGTGCCTGTTTTGGTAGAGGTGATTGGGAATGGATCCCCAAGAAACAAAGAGAATGCAGCTGCCGTCTTAGTGCACCTTTGTTCTGGTGATCAACAATATCTAGCTCAGGCTCATGAGCTAGGGGTGAATGGTCCATTGTTGGAATTAGCTCAGAATGGAACTGACAGAGGCAAAAGAAAAGCTGCACAATTGCTTGAGCGTATGAGCAGGTTCCTTGAGCAGCAGCAGCAGCATGAGGAAGAAGTTCAAACACAAACTGAGCTTCAAGCTCAGAGCCAGGATAACGCACTACCTTCTATTACTAACCTTGATGATAGCTGA 2004 0.4596 MEVEKEATAESLIELVSEISAISDYRSTVKKEYCNLVRRLKLLTPLFEEIRDSNKPIPEETSTAMFSLKKAMESAKELLRFGSEGSKIYMVLERDQIMNKFHEVTAQLEQALGGISYDKLDISDEVKEQVELVLAQFTRAKGRVDAPDIELYEDLLSLYDKTSDAATDSSVIRRLAEKLQLNGIVDLTQESVALHEMVAASGGDPGSSIEKMSILLKKIKESAQTENLDVDDNVGGNSLSSSCCKQGKNEMNHQPPAIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQTLSSTVLTPNYVLRSLIAQWCEVNGIEPPKRPSSSRLSKSASTCSPAERSKIENLLQKLTSGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLCMPDSRIQEHAVTALLNLSICENNKGSIISAGAVPGIVHVLKKGSMEARENAAATLFSLSVIDENKVTIGSSGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPGGGMVDEALAILAILASHPDGKAAIRSAEAVPVLVEVIGNGSPRNKENAAAVLVHLCSGDQQYLAQAHELGVNGPLLELAQNGTDRGKRKAAQLLERMSRFLEQQQQHEEEVQTQTELQAQSQDNALPSITNLDDS 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1841g00016 667 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Gabi1841g00016 667 Gene3D - 7 117 IPR036537 GO:0007166
Gabi1841g00016 667 Gene3D - 336 492 IPR011989 -
Gabi1841g00016 667 SMART arm_5 467 507 IPR000225 GO:0005515
Gabi1841g00016 667 SMART arm_5 549 589 IPR000225 GO:0005515
Gabi1841g00016 667 SMART arm_5 385 425 IPR000225 GO:0005515
Gabi1841g00016 667 SMART arm_5 508 548 IPR000225 GO:0005515
Gabi1841g00016 667 SMART arm_5 426 466 IPR000225 GO:0005515
Gabi1841g00016 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515
Gabi1841g00016 667 Pfam U-box domain 258 328 IPR003613 GO:0004842|GO:0016567
Gabi1841g00016 667 MobiDBLite consensus disorder prediction 639 667 - -
Gabi1841g00016 667 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Gabi1841g00016 667 Gene3D - 495 657 IPR011989 -
Gabi1841g00016 667 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Gabi1841g00016 667 CDD MLKL_NTD 10 136 - -
Gabi1841g00016 667 MobiDBLite consensus disorder prediction 634 667 - -
Gabi1841g00016 667 PANTHER U BOX DOMAIN-CONTAINING 28 631 - -
Gabi1841g00016 667 SMART Ubox_2 261 324 IPR003613 GO:0004842|GO:0016567
Gabi1841g00016 667 CDD RING-Ubox_PUB 259 311 IPR045210 -
Gabi1841g00016 667 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515
Gabi1841g00016 667 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515
Gabi1841g00016 667 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 331 IPR013083 -
Gabi1841g00016 667 FunFam RING-type E3 ubiquitin transferase 532 651 - -
Gabi1841g00016 667 Coils Coil 622 642 - -
Gabi1841g00016 667 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515
Gabi1841g00016 667 SUPERFAMILY RING/U-box 247 334 - -
Gabi1841g00016 667 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842|GO:0016567
Gabi1841g00016 667 Pfam Neurochondrin 520 638 IPR008709 -
Gabi1841g00016 667 SUPERFAMILY ARM repeat 356 640 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1841g00016 Gabi-Chr1841 242095 247667 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1841g00016 1 644 U-box Gene Family AT3G46510 71.101 0.0 918
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1841g00016 - - qsa:O6P43_000217 1032.71