Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1841g00011 ATGGAGCTTTTGAATCCTTCTCATCCTCCTCATCCTCACCATGCAGCACCTACCTCGATTTTACACCTTGGCTTTCACCGTGTGCCCTCTTCTGTTCAATCTCAGATACCCCAACCTATGGAAGAACGTGCATGTAAGGTTCATGTAGCCGTTGGGAAATCGCTCGAGAAAACTGTCAACTTGCTTAAATGGACTTTCAACCAGTTTCGGAACACAGAAATCATCATAATTCATGTTTATCAACCTTCTCTCTTGATCCCCACTTTATTGGGGAAATTGCCAGCATCCCAGGCTAATCCTGAAGTGGTGTCTGCTTTTCGAAGAGATGAAAGAGAACAGATCATGAGGCTTTTAAACAAGTGCTTGAGCATTTGCCGCGCGGCTAAGGTTAAGGCTAGCATTATTGTTACTGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTATTAGGAACAATATTAGGAAGCTTGTTATCGGAGCAGTGCCAGAAAATTGGATGAAAATGAAAAGGAATTCCAGTAAAGCAAATTATGCTGCCAAAAATGCTCCCCCATTCTGTGAAATATGGTTTATCTGTAAAGGTAAACACATTTGTACAAGAGAGGCTTCCGAAACATCATGTTCTTTATCTTCATGTACTCAACCTGAGATTGTAGCCACAGAAAGCTTGAGATGTGAATCTTCTCAATATGGTAAGAATGAATTATTCCATTCAGAATATCTTCAATCAAATTCTGCAACAACTACCACATGTTCCAGAATTAGAAGTTGGGTTCAGGGTGAAATTATTGAAACCGAAGCCACTTTTTCATCCAAATCATCCAATTGTAACAGTCATTGTTCCCCCCAAAATTCTTCTGGGGTATATTTAGATACATATTTAGAGGTCACGGAAGAAAGTATTAATAGTCAACTTGCTGAAACCAAAAGAGAAGCTGAGGCAGCAACAGATGAGGCATTTGAAGAGCTATTGAAGTGCAAGAGGTTGGAAGTCGAAGCCATGGATGCCATAAGGAAGGTCAATTTCTTTGAATCTGCCGTTGCACGTGAAGTGAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGTTACAGTACAAGAACAACAAAAGATCTTGGATGAGAGCGAAGAAATTGCTGGTGAGCTACAAATGACCATGAGAAATATTACCCTACTTGATAGTCATTTTCAGGAAGCAAACCGAAGGCGAAATGAAGCTGCAGACGAACTATCACTAATTCAAGCATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTCGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCTGAAGATTTGCCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACTTGCAATTTTTCCGAGAGCTTTAAAATCAGGCAAGGTGGATATGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAGGAAGTTCCATCCACATAACACGCAAGTACCCGCAGAGTTTTATCAAGAGGTTCAAGTTCTTGGTTGTCTCCAGCACCCACATTTGTTGACTTTGCTTGGTGTTTGCCCCGAAGCCTGGTCAATTGTATATGAGTACGCCCCCAATGGAAATCTTCAAGACTACCTATTCCGAAAAAGAAACAATTCCCCTCTACCATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCACTCTGCTTCTTACATTCTTCTAAACCTGAAACAATTATCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTTCGCTTAGTTGCAAGATATGTGAATTTGGGTTCTGCAGGCTGGTGACAGAGGAGTCTCTCTATCGTCCTAGTTTCCGCTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACGGATCCAGAGTTTCAGAGAACTGGAATACTAACACCCAAGTCTGACATCTACTCCTTTGGGATCATCATTTTGCAACTTCTCACCGGTAGGACTCCTGTTGGATTAACAGTTGTAGTTCGCAGCGCAGTTTCATGTGGAAAAATGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCTTCAGCTGTGGCAACACGTTTGTTTGAACTAGGATTGCAATGCTGTCAACTAAATCGAAGAGACAGACCAGAGTTAACACCTACTCTAGTAAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAACGACCTGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCATAATACTTCTCCAATGACTAATTTAAAATTGAGTCACCTTCTTCTTACTCCCAATCACGCACTTAGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2481 0.4212 MELLNPSHPPHPHHAAPTSILHLGFHRVPSSVQSQIPQPMEERACKVHVAVGKSLEKTVNLLKWTFNQFRNTEIIIIHVYQPSLLIPTLLGKLPASQANPEVVSAFRRDEREQIMRLLNKCLSICRAAKVKASIIVTEADQVQKGIVDLVIRNNIRKLVIGAVPENWMKMKRNSSKANYAAKNAPPFCEIWFICKGKHICTREASETSCSLSSCTQPEIVATESLRCESSQYGKNELFHSEYLQSNSATTTTCSRIRSWVQGEIIETEATFSSKSSNCNSHCSPQNSSGVYLDTYLEVTEESINSQLAETKREAEAATDEAFEELLKCKRLEVEAMDAIRKVNFFESAVAREVKLRKEAEDALRVTVQEQQKILDESEEIAGELQMTMRNITLLDSHFQEANRRRNEAADELSLIQASISTLWQERQQIRRQKMEALRWLERWKSRGQVGAAHCNGVIGFAEDLPELAEFSLSDLQNATCNFSESFKIRQGGYGCIYKGEMLGRTVAIRKFHPHNTQVPAEFYQEVQVLGCLQHPHLLTLLGVCPEAWSIVYEYAPNGNLQDYLFRKRNNSPLPWNTRARMIAEIASALCFLHSSKPETIIHGDLKPETILLDSSLSCKICEFGFCRLVTEESLYRPSFRLSTEPKGAFTYTDPEFQRTGILTPKSDIYSFGIIILQLLTGRTPVGLTVVVRSAVSCGKMSSILDSSAGEWPSAVATRLFELGLQCCQLNRRDRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHNTSPMTNLKLSHLLLTPNHALRLAIQDWLCKS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1841g00011 826 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 756 826 IPR013083 -
Gabi1841g00011 826 ProSiteProfiles Protein kinase domain profile. 482 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1841g00011 826 CDD STK_N 46 196 - -
Gabi1841g00011 826 Gene3D Transferase(Phosphotransferase) domain 1 555 755 - -
Gabi1841g00011 826 PANTHER OS02G0152300 PROTEIN 47 820 - -
Gabi1841g00011 826 Coils Coil 300 320 - -
Gabi1841g00011 826 ProSiteProfiles U-box domain profile. 755 826 IPR003613 GO:0004842|GO:0016567
Gabi1841g00011 826 Pfam Protein tyrosine and serine/threonine kinase 487 738 IPR001245 GO:0004672|GO:0006468
Gabi1841g00011 826 SUPERFAMILY Protein kinase-like (PK-like) 467 742 IPR011009 -
Gabi1841g00011 826 Pfam U-box domain 756 825 IPR003613 GO:0004842|GO:0016567
Gabi1841g00011 826 SUPERFAMILY RING/U-box 753 825 - -
Gabi1841g00011 826 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 185 - -
Gabi1841g00011 826 Gene3D HUPs 41 185 IPR014729 -
Gabi1841g00011 826 Gene3D Phosphorylase Kinase; domain 1 459 554 - -
Gabi1841g00011 826 CDD RING-Ubox_WDSUB1-like 757 812 - -
Gabi1841g00011 826 SMART Ubox_2 759 822 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1841g00011 Gabi-Chr1841 124027 128448 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1841g00011 46 823 U-box Gene Family AT2G45910 37.189 2.46e-174 522
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi1841g00011 PK_Tyr_Ser-Thr 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1841g00011 - - gmx:100788846 1348.18