Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1841g00010 ATGGAGCTTTTGAATCCTTCTCATCCTCCTCATCCTCACCATGCAGCACCTACCTCGATTTTACACCTTGGCTTTCACCGTGTGCCCTCTTCTGTTCAATCTCAGATACCCCAACCTATGGAAGAACGTGCATGTAAGGTTCATGTAGCCGTTGGGAAATCGCTCGAGAAAACTGTCAACTTGCTTAAATGGACTTTCAACCAGTTTCGGAACACAGAAATCATCATAATTCATGTTTATCAACCTTCTCTCTTGATCCCCACTTTATCATCCCAGGCTAATCCTGAAGTGGTGTCTGCTTTTCGAAGAGATGAAAGAGAACAGATCATGAGGCTTTTAAACAAGTGCTTGAGCATTTGCCGCGCGGCTAAGGTTAAGGCTAGCATTATTGTTACTGAAGCTGACCAAGTCCAAAAAGGAATTGTTGATTTGGTTATTAGGAACAATATTAGGAAGCTTGTTATCGGAGCAGTGCCAGAAAATTGGATGAAAATGAAAAGGAATTCCAGTAAAGCAAATTATGCTGCCAAAAATGCTCCCCCATTCTGTGAAATATGGTTTATCTGTAAAGGTAAACACATTTGTACAAGAGAGGCTTCCGAAACATCATGTTCTTTATCTTCATGTACTCAACCTGAGATTGTAGCCACAGAAAGCTTGAGATGTGAATCTTCTCAATATGGTAAGAATGAATTATTCCATTCAGAATATCTTCAATCAAATTCTGCAACAACTACCACATGTTCCAGAATTAGAAGTTGGGTTCAGGGTGAAATTATTGAAACCGAAGCCACTTTTTCATCCAAATCATCCAATTGTAACAGTCATTGTTCCCCCCAAAATTCTTCTGGGGTATATTTAGATACATATTTAGAGGTCACGGAAGAAAGTATTAATAGTCAACTTGCTGAAACCAAAAGAGAAGCTGAGGCAGCAACAGATGAGGCATTTGAAGAGCTATTGAAGTGCAAGAGGTTGGAAGTCGAAGCCATGGATGCCATAAGGAAGGTCAATTTCTTTGAATCTGCCGTTGCACGTGAAGTGAAGCTCAGAAAAGAGGCTGAGGATGCACTGAGAGTTACAGTACAAGAACAACAAAAGATCTTGGATGAGAGCGAAGAAATTGCTGGTGAGCTACAAATGACCATGAGAAATATTACCCTACTTGATAGTCATTTTCAGGAAGCAAACCGAAGGCGAAATGAAGCTGCAGACGAACTATCACTAATTCAAGCATCCATCTCAACCCTGTGGCAAGAAAGGCAGCAGATCAGGAGACAGAAAATGGAAGCCCTCCGCTGGCTCGAGCGGTGGAAAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTGCTGAAGATTTGCCTGAGTTAGCAGAATTTTCATTATCAGATCTTCAAAATGCCACTTGCAATTTTTCCGAGAGCTTTAAAATCAGGCAAGGTGGATATGGTTGTATATATAAGGGGGAAATGTTGGGTAGGACTGTTGCTATAAGGAAGTTCCATCCACATAACACGCAAGTACCCGCAGAGTTTTATCAAGAGGTTCAAGTTCTTGGTTGTCTCCAGCACCCACATTTGTTGACTTTGCTTGGTGTTTGCCCCGAAGCCTGGTCAATTGTATATGAGTACGCCCCCAATGGAAATCTTCAAGACTACCTATTCCGAAAAAGAAACAATTCCCCTCTACCATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCACTCTGCTTCTTACATTCTTCTAAACCTGAAACAATTATCCATGGTGATCTGAAGCCTGAAACTATACTTCTTGATTCTTCGCTTAGTTGCAAGATATGTGAATTTGGGTTCTGCAGGCTGGTGACAGAGGAGTCTCTCTATCGTCCTAGTTTCCGCTTGAGCACTGAGCCAAAGGGTGCTTTCACATATACGGATCCAGAGTTTCAGAGAACTGGAATACTAACACCCAAGTCTGACATCTACTCCTTTGGGATCATCATTTTGCAACTTCTCACCGGTAGGACTCCTGTTGGATTAACAGTTGTAGTTCGCAGCGCAGTTTCATGTGGAAAAATGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCTTCAGCTGTGGCAACACGTTTGTTTGAACTAGGATTGCAATGCTGTCAACTAAATCGAAGAGACAGACCAGAGTTAACACCTACTCTAGTAAGAGAATTGGAGCAGTTGCATGTTTCAGAAGAACGACCTGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTTACCTATGAAGGGGATGCCATACGTGAATGGTTGGAAAATGGGCATAATACTTCTCCAATGACTAATTTAAAATTGAGTCACCTTCTTCTTACTCCCAATCACGCACTTAGACTTGCCATCCAAGACTGGCTTTGCAAATCTTGA 2466 0.4205 MELLNPSHPPHPHHAAPTSILHLGFHRVPSSVQSQIPQPMEERACKVHVAVGKSLEKTVNLLKWTFNQFRNTEIIIIHVYQPSLLIPTLSSQANPEVVSAFRRDEREQIMRLLNKCLSICRAAKVKASIIVTEADQVQKGIVDLVIRNNIRKLVIGAVPENWMKMKRNSSKANYAAKNAPPFCEIWFICKGKHICTREASETSCSLSSCTQPEIVATESLRCESSQYGKNELFHSEYLQSNSATTTTCSRIRSWVQGEIIETEATFSSKSSNCNSHCSPQNSSGVYLDTYLEVTEESINSQLAETKREAEAATDEAFEELLKCKRLEVEAMDAIRKVNFFESAVAREVKLRKEAEDALRVTVQEQQKILDESEEIAGELQMTMRNITLLDSHFQEANRRRNEAADELSLIQASISTLWQERQQIRRQKMEALRWLERWKSRGQVGAAHCNGVIGFAEDLPELAEFSLSDLQNATCNFSESFKIRQGGYGCIYKGEMLGRTVAIRKFHPHNTQVPAEFYQEVQVLGCLQHPHLLTLLGVCPEAWSIVYEYAPNGNLQDYLFRKRNNSPLPWNTRARMIAEIASALCFLHSSKPETIIHGDLKPETILLDSSLSCKICEFGFCRLVTEESLYRPSFRLSTEPKGAFTYTDPEFQRTGILTPKSDIYSFGIIILQLLTGRTPVGLTVVVRSAVSCGKMSSILDSSAGEWPSAVATRLFELGLQCCQLNRRDRPELTPTLVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHNTSPMTNLKLSHLLLTPNHALRLAIQDWLCKS 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1841g00010 821 Coils Coil 295 315 - -
Gabi1841g00010 821 SUPERFAMILY Protein kinase-like (PK-like) 462 737 IPR011009 -
Gabi1841g00010 821 SMART Ubox_2 754 817 IPR003613 GO:0004842|GO:0016567
Gabi1841g00010 821 CDD STK_N 46 191 - -
Gabi1841g00010 821 ProSiteProfiles U-box domain profile. 750 821 IPR003613 GO:0004842|GO:0016567
Gabi1841g00010 821 PANTHER OS02G0152300 PROTEIN 47 815 - -
Gabi1841g00010 821 Gene3D Phosphorylase Kinase; domain 1 454 549 - -
Gabi1841g00010 821 Gene3D HUPs 46 187 IPR014729 -
Gabi1841g00010 821 CDD RING-Ubox_WDSUB1-like 752 807 - -
Gabi1841g00010 821 SUPERFAMILY RING/U-box 748 820 - -
Gabi1841g00010 821 ProSiteProfiles Protein kinase domain profile. 477 743 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1841g00010 821 Pfam U-box domain 751 820 IPR003613 GO:0004842|GO:0016567
Gabi1841g00010 821 Pfam Protein tyrosine and serine/threonine kinase 482 733 IPR001245 GO:0004672|GO:0006468
Gabi1841g00010 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 751 821 IPR013083 -
Gabi1841g00010 821 Gene3D Transferase(Phosphotransferase) domain 1 550 750 - -
Gabi1841g00010 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 62 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1841g00010 Gabi-Chr1841 124027 128448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1841g00010 46 818 U-box Gene Family AT2G45910 36.940 3.54e-171 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gabi1841g00010 PK_Tyr_Ser-Thr 1.2e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1841g00010 - - gmx:100788846 1330.85