Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1835g00020 ATGATGACACATGGATCATGTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCACCTCTAGATGGACTTATGATGTGTTCCTCAGTTTTAGAGGCGATGATACTCGAAGTGGCTTCACTGGCAACCTTTATAAATCTCTTTGTGACAGGGGAATCCACACCTTCATAGATGATGAGGACCTTACAAGAGGGGAAGAAATTGCACCAGCTCTTTTCAAAGCAATTCAGCAATCTAGAATAGCAATTATTGTTTTCTCCAAAAACTATGCTTCCTCTGCTTATTGTCTTGAAGAACTTGTCAAAATCCTTGACTGCATCATGAAAAAGGGTCGATGGGTTTTGCCAATTTTTTATGGAGTGAGTCCATGTTATGTTCGGCATCAAAAGGGTTCTTATGGAAAAGCATTGGCTAAGCTTGAAGAAAGATTCAGGAATGACAAGGACAAGGTGCACAAGTGGAAATTAGCTTTACAAGAAGCAGCTAATTTGTCTGGTTGGCATTTCAAATTCAAACACGGGTACGAATATGAATTTATTCGGAGGATCATTGAAGAGGTGTCCAAAAAGATAAATCGTAACCCTTTACATGTGGCTAAGTATCCAATTGGATTGAAGTCTAGAGTGCAAGAGGTAAACTCATGTTTAGAAGTTGGATCCAATCAAGGATTTAGCATGGTGGGGATTTTTGGAATTGGGGGGATAGGCAAAACAACAATTGCATGTGCAGTGTATAATTTCATTGCTGATCAATTTGATGGTCATTGTTTTCTTGCTGACATCAGAGAAAATTCTATGAAGTATGGTTTAGTACAACTTCAGGAGACAGTACTCTCTGAAATAGTTGGGGAGAAGAGTATCAAGTTGGGGAGTATTAATAGGGGAATGGAAGTAATGAAAAGGAAGCTTCAGAGAAAGAAAGTTCTTTTGATTCTTGATGATGTTGATAATATGGAGCAATTAAAAGCACTTGCTGGAGATGTTTCTTGGTTTGGTTATGGTAGCAAAATCATTATCACAACAAGGGATAAGCATTTGCTACATGTTCATGGTGTTGAAAGAACATATGAGGCAAAAGGTTTAAATCACAAAGAAACTCTCGAGTTGTTTAGTTGGCATGCTTTCAAAAATAACGAGGTTGATCCAAGTTACATTGATATCTCAAAGCGTGCAATACTTTATTCCAATGGTCTTCCGTTGGCTTTAGAGATAATAGGTTCTAACTTAATTGGTAAAACAATGTCAGAATGGAATGCTGCGTTAGATACCTATGAAAAAATTCCAGATGAAGATATTCAGAAAACACTAAAAGTAAGCTATGATGGTTTGAAAGGAAATGAGAAGGAAGTTTTCCTTGATATAGCTTGTTTCTTTAAAGGTTGCAATTTGAAAGATGTCATCAGTGTATTGCTACAAGGTCGTGGCTTCTCCCCAGTATATGTTATTCGAGTGCTGATTGATAAATCTCTCATAAAGATTGATCAACATGGTTTTGTGAGAATGCATAACTTGGTAGAGGACATGGGCAGAGAAATTGTTCGGCAGGAATCACCATCAGAACCTGGCAAACGTAGTAGACTATGGTGTTCCGAGGATATTCTAGATGTTTTAGAAAATGATAAGGGAACCGAAGCAATCGAAGTAGTCATGCTTCACTTGCCAAAGAATAAGGAAGTTCGGTGGAATGGAAGTGAGCTGAAGAAGATGAAAAACCTCAAAATACTTACCATTGAAAATGCTCACTTTTCTAGAGGCCCTGAATATCTCCCAAACAGTTTGAGAGTGCTAAAATGGCAGGGATATCCTTCATCATCTCTGCCACTTGAGTTTGATCCAAGGAGACTTGTCATGCTAGACTTGTCTATGAGTTGCAATAGATTGGACAAACTACTTGAACTTATGAAGTTCGAGTCTTTGAGTGAAATGGTTTTAAGAGGTTGCAAATTCATAAAAAAGGTACCTGACATGTCTGGAGCTCCAAATTTAATGAAGTTGTGCCTTGATAACTGCAAGAATTTAATAGAAGTTCATGATTCCATTGGGTTTCTTGATAAACTTACATGGTTGACTGCTATTGGATGCACCAATCTGAGGATTCTTCCCCACAGCTTCAAGTTAACAAATCTTGAATATCTGTCTCTCAGAAAATGCTCTAGTCTCCACAGTTTGCCAAATATATTAGAAGAAATGATACATATAAAAAACATTGATTTGTGTGGAACTGCTATAAAAGAATTGCCATTTTCATTCAGAAAACTCATTGGGCTTAAATCTTTAGTGCTGGACAAGTGCAAGATGCTTCATCAAATCCCAAGAAGTATTCTGTTGTTACCAAAACTTGAGAGATTGACAGCTGTAAAATGTGGACGGTATGCAAATTTGATCCTTGGCAAAGGTGAAGAACAAGAAAGATTAAACTCCTGCAACTTGACACCTACCTGCTTCCCCAATGTAGAATTCTTGGACCTAAGTTGCAGTCCTTTCAAAATCCTTCCTGAATGCATCAGTGAATGTCTCTTTCTGAAGAATCTAGTTTTGGATAATTGCAAGGAGCTTCAAGAAATCAGAGTGGTTCCTCCAAAGATAAAATATCTCTCGGCAATAAATTGCATATCATTAACTCATGAATCTCAAAGCATGTTATTGAGTCAGAGATTACATGAGGGTGGAAGCACTGATTTTTCTCTTCCGGGATTATGGATACCAGAATGGTTCGATCATTGTACTAATGGATCATCCCTTTCTTTCTGGTTTCGTAACAAATTCCCAAGGATGGCTCTAGCTGTCGTTGTTGGAGTTTTGGACAAGCAGGGTAGTTTCCTCAGTTCAAGGTTCCACTTGCTCATCAATGGCATTCAAAAGCTGCATTGCCATTTCACTGTGCAATCAAAACTAGTAACATACCATGTATTTTTGTCCGATATACAGCTCAAATCCTACAATGGTGAATTGGAAAGTGTGTATGTTATGGACGGGTGGAACCATGTTGAAGTTTCATATGTGGGACCAAGTAAAAATGATTCTCCACACACATGTAAAGTCAAAAAAGGAATCATAAAATGGATGGGGGCTCATGTGTACAAGCAAACAACATGCATGGAGGATGTCCGGTTTACGAATCCAAAGTCTCCAAAGAGAGCATATAGCGATTTTTCCAAGCCTGATTTGGACCAAAATTTTCAACCATTACCCAAAAGAAGATGTGGATCAGAAGGCATGGAAATTTGTGAGGCACAACATGTAGAGCAGCATCAAGTTAGAAGTGGCTATCATGCTGTGTCACACAGTTTATGGTTGGCGATTAGCAGCATTGAAGCTGCTCCAAATGTTAAAATGCTAATGTGGATTATTTGTCAAAATGCTTTGCCAACTTATGAATATCTTTTCAAGGGGAAGCTTGTGAATAGCCCACTCTGTCCCGTTTGTGGAACAGAACCTGAAACTGTTGAACATGTGTTCCTGTTTTGCCCATGGACTAGACCCCTTTGGTTTGGAAGTGATTTCCAGTGGAGTATTGATGTCAATTCAGTTCAAAGCTTTCAACTTTGGCTTTGCCAGAAACTCGAGGAGATTAAAAGGGTATATCCGAAGAATGCCAATAAAGTATCTGCTCTTGTGGGCAATATTTGTTGGGCAATTTGGAAGGGAAGGAATGAATTTGTTCTTGAAGGCCAACCAGTTAATCCTTTGATTTTAAGGTAG 3702 0.3844 MMTHGSCSSSSSSSSSSSSTSRWTYDVFLSFRGDDTRSGFTGNLYKSLCDRGIHTFIDDEDLTRGEEIAPALFKAIQQSRIAIIVFSKNYASSAYCLEELVKILDCIMKKGRWVLPIFYGVSPCYVRHQKGSYGKALAKLEERFRNDKDKVHKWKLALQEAANLSGWHFKFKHGYEYEFIRRIIEEVSKKINRNPLHVAKYPIGLKSRVQEVNSCLEVGSNQGFSMVGIFGIGGIGKTTIACAVYNFIADQFDGHCFLADIRENSMKYGLVQLQETVLSEIVGEKSIKLGSINRGMEVMKRKLQRKKVLLILDDVDNMEQLKALAGDVSWFGYGSKIIITTRDKHLLHVHGVERTYEAKGLNHKETLELFSWHAFKNNEVDPSYIDISKRAILYSNGLPLALEIIGSNLIGKTMSEWNAALDTYEKIPDEDIQKTLKVSYDGLKGNEKEVFLDIACFFKGCNLKDVISVLLQGRGFSPVYVIRVLIDKSLIKIDQHGFVRMHNLVEDMGREIVRQESPSEPGKRSRLWCSEDILDVLENDKGTEAIEVVMLHLPKNKEVRWNGSELKKMKNLKILTIENAHFSRGPEYLPNSLRVLKWQGYPSSSLPLEFDPRRLVMLDLSMSCNRLDKLLELMKFESLSEMVLRGCKFIKKVPDMSGAPNLMKLCLDNCKNLIEVHDSIGFLDKLTWLTAIGCTNLRILPHSFKLTNLEYLSLRKCSSLHSLPNILEEMIHIKNIDLCGTAIKELPFSFRKLIGLKSLVLDKCKMLHQIPRSILLLPKLERLTAVKCGRYANLILGKGEEQERLNSCNLTPTCFPNVEFLDLSCSPFKILPECISECLFLKNLVLDNCKELQEIRVVPPKIKYLSAINCISLTHESQSMLLSQRLHEGGSTDFSLPGLWIPEWFDHCTNGSSLSFWFRNKFPRMALAVVVGVLDKQGSFLSSRFHLLINGIQKLHCHFTVQSKLVTYHVFLSDIQLKSYNGELESVYVMDGWNHVEVSYVGPSKNDSPHTCKVKKGIIKWMGAHVYKQTTCMEDVRFTNPKSPKRAYSDFSKPDLDQNFQPLPKRRCGSEGMEICEAQHVEQHQVRSGYHAVSHSLWLAISSIEAAPNVKMLMWIICQNALPTYEYLFKGKLVNSPLCPVCGTEPETVEHVFLFCPWTRPLWFGSDFQWSIDVNSVQSFQLWLCQKLEEIKRVYPKNANKVSALVGNICWAIWKGRNEFVLEGQPVNPLILR 1233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1835g00020 1233 Pfam NB-ARC domain 208 441 IPR002182 GO:0043531
Gabi1835g00020 1233 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 25 778 IPR044974 GO:0006952
Gabi1835g00020 1233 Gene3D Ribonuclease Inhibitor 549 703 IPR032675 -
Gabi1835g00020 1233 Gene3D Ribonuclease Inhibitor 704 891 IPR032675 -
Gabi1835g00020 1233 MobiDBLite consensus disorder prediction 1 20 - -
Gabi1835g00020 1233 Pfam zinc-binding in reverse transcriptase 1098 1163 IPR026960 -
Gabi1835g00020 1233 SMART till_3 24 164 IPR000157 GO:0007165
Gabi1835g00020 1233 Gene3D - 360 444 IPR042197 -
Gabi1835g00020 1233 Pfam TIR domain 25 192 IPR000157 GO:0007165
Gabi1835g00020 1233 Gene3D - 190 353 IPR027417 -
Gabi1835g00020 1233 ProSiteProfiles TIR domain profile. 23 191 IPR000157 GO:0007165
Gabi1835g00020 1233 SUPERFAMILY L domain-like 547 883 - -
Gabi1835g00020 1233 PRINTS Disease resistance protein signature 395 409 - -
Gabi1835g00020 1233 PRINTS Disease resistance protein signature 226 241 - -
Gabi1835g00020 1233 PRINTS Disease resistance protein signature 704 720 - -
Gabi1835g00020 1233 PRINTS Disease resistance protein signature 302 316 - -
Gabi1835g00020 1233 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 454 IPR027417 -
Gabi1835g00020 1233 Gene3D - 17 189 IPR035897 -
Gabi1835g00020 1233 FunFam Disease resistance protein (TIR-NBS-LRR class) 21 193 - -
Gabi1835g00020 1233 SUPERFAMILY "Winged helix" DNA-binding domain 431 538 IPR036390 -
Gabi1835g00020 1233 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 167 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1835g00020 Gabi-Chr1835 221932 226421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1835g00020 20 846 WRKY Transcription Factor Family AT4G12020 33.060 1.41e-96 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1835g00020 - - aprc:113858280 1956.8