Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1835g00019 ATGGAGGAGAGAAATGATACTGAGAAACTTGATGAGGTTATGCTACCAGGGTTCAGGTTTCATCCAACTGACGAGGAGCTTGTTGGATTTTACCTAAAGAGAAAGATTCAGCAAAGGTCTCTGTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAGTATGATCCTTGGGATCTTCCAAAGTTGGCTACTACAGGGGAGAAAGAGTGGTATTTCTACTGTCCCAGAGACAGAAAGTATAGAAACAGTGCAAGGCCTAATAGGGTAACAAGTGCTGGTTTCTGGAAAGCTACAGGGACTGACAGGCCTATATATTCCTCAGAGGGTTCAAAGTGTATTGGCTTGAAGAAATCCTTAGTGTTCTACAAAGGTAGAGCTGCCAAAGGTGTCAAAACTGACTGGATGATGCATGAGTTCAGATTACCTTCTCTCACTGTCTCATCATCATCATCATCATCCCCTAAGAAGTACATAGACAAGACGACCATTCCTGCTAATGAATCTTGGGCAATCTGCAGGATATTCAAGAAAACCAATGCTACAGCTCAAAGAGCTCTCTCTCACACTTGGGTTTCTTCCTTACCTGAAACGATAACAACCTCTGATATGATAACCAATGATCGAGAAAGCAACCAATTTTATTCAGCAAACATGCCATTGACAAAGAAAACTAGCTTAGGTAGCCAGTTTTGTACTGTTAGACACAATGACGACACACAACACTTAACCACTACTAGTAGTACTCTTTGTCCATTAGATGTTGCCTCTTATATTAAACCCCTTATTAATCCATTGTTTTACAAACCCTTTGATCGGTTACCCATTTCAAATGGAGACCTTACCAATGGATTATTATTCTCATCTCCTCTTGAAACATCTACAACTAGTGCTAAATCTTCAATGGATGTTTCTTCCTTAGCGCTATTGAGTATGTCATCTTCTGTGCTTGGAGATTTTAGTGAGACCACTGAGGGAACAACCACAAACTTCGGCAGTGGGTTACAAGAGCACAATAATGGCTACACAATACCATTATTACGTGAGATGCAAGGGACCATTGGCAACCAGCAAGATGAAAATGTATTGGTAATGATTCCTAATGTGAATGTGCCTCGTGTTGATGAGCAACATTTGGAGACAGTACGATTTCCATTCGGTATGCCTTTCAATATTGGCGATGGATGGAAGTCAAGTGTGCTTTTGGATACTTCAACTTGTCCTTGTGATGCACCCTCTTGTTATTCCTCAACCAATTAA 1257 0.4065 MEERNDTEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRSLSIELIKQLDIYKYDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTSAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTVSSSSSSSPKKYIDKTTIPANESWAICRIFKKTNATAQRALSHTWVSSLPETITTSDMITNDRESNQFYSANMPLTKKTSLGSQFCTVRHNDDTQHLTTTSSTLCPLDVASYIKPLINPLFYKPFDRLPISNGDLTNGLLFSSPLETSTTSAKSSMDVSSLALLSMSSSVLGDFSETTEGTTTNFGSGLQEHNNGYTIPLLREMQGTIGNQQDENVLVMIPNVNVPRVDEQHLETVRFPFGMPFNIGDGWKSSVLLDTSTCPCDAPSCYSSTN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1835g00019 418 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 240 - -
Gabi1835g00019 418 FunFam NAC domain-containing protein 35 23 180 - -
Gabi1835g00019 418 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Gabi1835g00019 418 Gene3D NAC domain 23 182 IPR036093 GO:0003677|GO:0006355
Gabi1835g00019 418 ProSiteProfiles NAC domain profile. 14 177 IPR003441 GO:0003677|GO:0006355
Gabi1835g00019 418 SUPERFAMILY NAC domain 13 177 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1835g00019 Gabi-Chr1835 217400 219567 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1835g00019 1 320 NAC Transcription Factor Family AT1G26870 56.364 5.59e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gabi1835g00019 NAM 7.3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1835g00019 - - vra:106768003 602.823