Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1835g00002 ATGGCTGATCCTCATAAAACTGGTCTTGGTGAGAGGGATATTGAGCAGGCAATTGCATCTCTTAAGAAAGGCTCATATCTGCTAAAGTATGGACGAAGAGGGAAGCCAAAGTTCTGCCCGTTTAGGCTTTCCAATGATGAGTCTCTACTCGTATGGTACTCTGGCAAGGAAGAGAAAAAGGTTAAGCTCAGCACTGTTTCAAGGATCATTCCTGGCCAGCGAACTGCAACATTTCAGCGGTATCCTCGGCCTGAAAAGGAATATCAGTCATTTTCTCTTATATACAATGATAGGTCCTTGGATTTGATATGTAAGGATAAAGATGAAGCTGAAATCTGGTTTGCCGGTCTTAAGGCATTAGTGACTCGAGGTAACAATCGCAAGTGGAGATTCGTATCAACACCTGAAAGTCTGTGTTCTGATAGTCCAAAGTCTGGCACACGAAGATCCACTCCGTCAATTGCACCATTTGACCCCAGAGATACCGACAGAGTTACTTTTGACAATTCTTCGCAGAATAGGTGGGTAAAGGCTTTCTCTGAAATAATTTCATACACTGAAGGAAGCAAGAGTTCTAGTCAAGCGGAGTCAATTGCAAATTCTTCTTTATCCTCTGGGTCCGTGGATAACTCAAGCAATCGAAATTCTGCATCTGAGGCATTTCGAGTTAGTTTATCCAGTGCTGTAAGTTCATCCAGCCACAGTTCTTATCATGAAGATTTTGATACTGCAGGTGACGTTTATATTTGGGGGGAAGGTATCACTGATGGAATTCTTGGTGGTGGTGTGCATAGAGTTGGAACCTTATCTAGTTCTAAGATTGATGCATTCCTCCCCAAGGCATTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAGACATGCTGTTCTAGTTTCCAAACAGGGAGAGATATTTAGTTGGGGGGAGGAGTCTGGAGGTAGGCTTGGACACGGTATAGAAGTGGATGTTTTTCACCCTAAACTCATTGACACTCTTAGTGGCATGAATATTGAGTTAGTAGCATGTGGAGAATATCATACTTGCGCTGTTACATATTCTGGGGAACTTTATTCCTGGGGGGATGGTATTCACAATTCCGGCTTGCTTGGGCATGGAAATGAAGTCAGTCACTGGATTCCTAAGAAAGTAAGTGGTAACATGGAAGGTTTCCGTGTATCATATGTGTCCTGTGGACCTTGGCACACAGCTATTATTACATCAGCTGGGCAGTTGTTTACATTTGGCGATGGAACTTTTGGTGCCTTGGGCCATGGAGATCATAGTAGCACAAATATTCCTCGGGAAGTAGAAACTTTAAAAGGGTTGAGAACAACCAGGGTTTCCTGTGGTGTTTGGCACACTGCTGCAGTTGTTGAGGTGTTAAATGAATCTGTGGAATCTTCAGCACACTCTTCTAGTGGAAAACTGTTCACCTGGGGTGATGGAGATAAAAGCCAACTTGGACATGTTGATAGGGAACCTAGACTAGTTCCCGAGTGTGTAATTGCATTGAGTAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAACGTCAGGACATGTATATACAATGGGCAGTACAGCTTACGGACAACTGGGCTGTCCTGCAGCTGATGGGAAAGTCCCTACACGTGTTGAAGATAAAATTGCTGACAGTTTCATAGAAGATATTGCATGTGGTTCATATCACGTTGCTGTCCTGACTTCAAAAGCAGAGGTTTACACATGGGGAAAGGGTTTGAATGGGCAATTAGGTCATGGAGACAATGGTCACAGGAATAAACCCACACTTGTCGAGTTTTTAAAAGATAAGCAAGTGAAGACTGTTGTTTGTGGTTCAAACTTTACTGCTGTTATATGTCTTCATAAATGGATACCTAGTGTTGATCATTCTGCATGTTCAGGTTGTCGTAATCCATTTAATTTCAGAAGAAAACGTCATAATTGTTACAACTGCGGACTTGTGTTTTGCAACTCATGCACCAGCAGGAAATCTACAAAAGCTTCCCTTGCTCCAAATTCCAACAAGCCGTATCGGGTTTGTGATGACTGTTATATTAAACTTAAGAAAGCTGCTGAATCAGTGTCCTTGGTGCAAACTCCTAGCTCGAGAAGTGGAAGTTTGCAAGACAGTAGGTCCACTAAAATACAGGGAACACTATTAAGGCTTGCATCTTTTGGTTCTATTGTTCAAACCGAAAGCAGTCACTCAAAGCTTCCTGAATCACATGATAGCCATCTCTTTCCAGCTTTGAATGGAAAATTACAGCTGGGGGTTTTTGCTCCTTCAAAATCATCAAATTCTCTTTCCATGGAATCCAGGAAACATCTTTCACTTTCAGAACCCGCTACAAGAATATCTGGTCAATCAACGTCTCCAGTGTCATCCAAGTCAAGCCCACGACAATCTTATGAAGATACCCATGATGATTTAAAGCACAGAAATGGCATTCTAAGTCAAGAAGTTATAAGTCTAAGGGCACAGGTTGAAGATCTTACTCGTAAGTCGAAAAGTCTTGAGGCTGAACTTGAGAGAACATCGAAGCAGTTGAAGGAAGTGACTGCTGTAGCTGCAGATGAAGCTGGAAAGTGTGAATCTGCGAAAGAGGTCATAAAGTCTTTGACAGCTCAGTTGAAAGAAGTGATGCAAAGGCTGCCTGAAGAACATAATGCTGACTGCGACACTGATTCGGATTCTGAAACTACTAATAGTATTCTAGATCAGTCCTTAGAAGAGTGCCATATAACAAACACTATCCCTCCCAAAAATGAAGACAACAGCAATGCAGCAAATCAGATATTACCTAACGGTACCAAAACTCAAAGTGGAAAGGCAGAGTGGGTGGTGCAAGATGAACCAGGTGTATACATAAGTTTGTCCTCCATGCCAGGTGGTGGTAATGAACTTAAGAGAGTTCGCTTCAGTCGGAGGCATTTCACGGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAATCAAAGTATTGGAGCGGCACAATATAGTTGCTTCATAG 3051 0.4238 MADPHKTGLGERDIEQAIASLKKGSYLLKYGRRGKPKFCPFRLSNDESLLVWYSGKEEKKVKLSTVSRIIPGQRTATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEIWFAGLKALVTRGNNRKWRFVSTPESLCSDSPKSGTRRSTPSIAPFDPRDTDRVTFDNSSQNRWVKAFSEIISYTEGSKSSSQAESIANSSLSSGSVDNSSNRNSASEAFRVSLSSAVSSSSHSSYHEDFDTAGDVYIWGEGITDGILGGGVHRVGTLSSSKIDAFLPKALESKVVLDVHSIGCGYRHAVLVSKQGEIFSWGEESGGRLGHGIEVDVFHPKLIDTLSGMNIELVACGEYHTCAVTYSGELYSWGDGIHNSGLLGHGNEVSHWIPKKVSGNMEGFRVSYVSCGPWHTAIITSAGQLFTFGDGTFGALGHGDHSSTNIPREVETLKGLRTTRVSCGVWHTAAVVEVLNESVESSAHSSSGKLFTWGDGDKSQLGHVDREPRLVPECVIALSNENICRVACGHSLTIALTTSGHVYTMGSTAYGQLGCPAADGKVPTRVEDKIADSFIEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNGHRNKPTLVEFLKDKQVKTVVCGSNFTAVICLHKWIPSVDHSACSGCRNPFNFRRKRHNCYNCGLVFCNSCTSRKSTKASLAPNSNKPYRVCDDCYIKLKKAAESVSLVQTPSSRSGSLQDSRSTKIQGTLLRLASFGSIVQTESSHSKLPESHDSHLFPALNGKLQLGVFAPSKSSNSLSMESRKHLSLSEPATRISGQSTSPVSSKSSPRQSYEDTHDDLKHRNGILSQEVISLRAQVEDLTRKSKSLEAELERTSKQLKEVTAVAADEAGKCESAKEVIKSLTAQLKEVMQRLPEEHNADCDTDSDSETTNSILDQSLEECHITNTIPPKNEDNSNAANQILPNGTKTQSGKAEWVVQDEPGVYISLSSMPGGGNELKRVRFSRRHFTEEQAEKWWAENGIKVLERHNIVAS 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1835g00002 1016 MobiDBLite consensus disorder prediction 135 152 - -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Gabi1835g00002 1016 Pfam Transcription factor regulating root and shoot growth via Pin3 956 1011 IPR013591 -
Gabi1835g00002 1016 ProSiteProfiles BRX domain profile. 957 1012 IPR013591 -
Gabi1835g00002 1016 MobiDBLite consensus disorder prediction 776 813 - -
Gabi1835g00002 1016 SUPERFAMILY RCC1/BLIP-II 243 636 IPR009091 -
Gabi1835g00002 1016 Coils Coil 876 896 - -
Gabi1835g00002 1016 FunFam PH, RCC1 and FYVE domains-containing protein 1 216 467 - -
Gabi1835g00002 1016 Pfam FYVE zinc finger 635 701 IPR000306 GO:0046872
Gabi1835g00002 1016 PRINTS Chromosome condensation regulator RCC1 signature 520 538 IPR000408 -
Gabi1835g00002 1016 PRINTS Chromosome condensation regulator RCC1 signature 359 375 IPR000408 -
Gabi1835g00002 1016 PRINTS Chromosome condensation regulator RCC1 signature 309 325 IPR000408 -
Gabi1835g00002 1016 PRINTS Chromosome condensation regulator RCC1 signature 416 430 IPR000408 -
Gabi1835g00002 1016 PRINTS Chromosome condensation regulator RCC1 signature 400 416 IPR000408 -
Gabi1835g00002 1016 PRINTS Chromosome condensation regulator RCC1 signature 578 599 IPR000408 -
Gabi1835g00002 1016 CDD PH_PLC_plant-like 12 122 - -
Gabi1835g00002 1016 Gene3D - 469 642 IPR009091 -
Gabi1835g00002 1016 SUPERFAMILY PH domain-like 13 121 - -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 413 IPR000408 -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 414 465 IPR000408 -
Gabi1835g00002 1016 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 891 - -
Gabi1835g00002 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 530 579 IPR000408 -
Gabi1835g00002 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 584 631 IPR000408 -
Gabi1835g00002 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Gabi1835g00002 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 414 462 IPR000408 -
Gabi1835g00002 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 358 410 IPR000408 -
Gabi1835g00002 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 478 527 IPR000408 -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 479 530 IPR000408 -
Gabi1835g00002 1016 MobiDBLite consensus disorder prediction 776 827 - -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 583 634 IPR000408 -
Gabi1835g00002 1016 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 639 701 IPR017455 -
Gabi1835g00002 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 643 711 IPR013083 -
Gabi1835g00002 1016 SUPERFAMILY FYVE/PHD zinc finger 635 710 IPR011011 -
Gabi1835g00002 1016 Pfam Pleckstrin homology domain 15 121 IPR001849 -
Gabi1835g00002 1016 Gene3D - 183 464 IPR009091 -
Gabi1835g00002 1016 SMART fyve_4 634 702 IPR000306 GO:0046872
Gabi1835g00002 1016 MobiDBLite consensus disorder prediction 930 956 - -
Gabi1835g00002 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 452 462 IPR000408 -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 531 582 IPR000408 -
Gabi1835g00002 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Gabi1835g00002 1016 Gene3D - 13 128 IPR011993 -
Gabi1835g00002 1016 MobiDBLite consensus disorder prediction 135 168 - -
Gabi1835g00002 1016 Coils Coil 834 868 - -
Gabi1835g00002 1016 Pfam Transcription factor BRX N-terminal domain 871 899 IPR027988 -
Gabi1835g00002 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 245 306 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1835g00002 Gabi-Chr1835 8592 17679 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1835g00002 955 1013 Major Intrinsic Protein MIP AT1G31880 52.542 1.10e-15 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1835g00002 - - pvu:PHAVU_003G066900g 1431.77