Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1831g00014 ATGGAGCATGATTTGAATGAGGAGCCTTTGGACCCAAGTCATAGTTCAGATTTTGAATTTGATTATTTATCATCGGATGAATCAGAATCTTCCGATGGAGATTGGCCACCTGTTTACTCTCAGGTTGAAATATCCAACGCTTTAAGGGAAGCCACAACAGATAATGCTCAAGATGAAACAAGGAATCATCAGCATGAAGTTGAAGAAGAAGGAATAGTCGCTGAAAGTGGGAAAGAGGTCAAAGGGAATGGTGGTAGTGATGCGAATAAGAGATCTTTGGTGGGGTCGGGTAGCAGTGGAAACTTTTATGATTGTAATATATGCTTTAAAAAGGCAATAGATCCTGTTTTGACATGTTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCATATGCTTATTCAAAGGCTAAGGAATGCCCTGTTTGTAATGGAGAGGTCACTCCAACAGGCATTGTTCCTATTTATGGCAATGCAAGTGTTAGTTGCAATTCTCACTTGGAATTTAAAGAATCTGAGAGTTTAAGAGTTCCTCCTCGACCCCAAGCACCTAGGATTGAGAGTATTTGGCAGCTTCCAGAAAGCGAAACTGAAACATCAAATCTTTCTGTGATCGAAAATGTTACGCTGTTTCATTACCTCGTTCATGGATTTGGAGATGGAGATCAGTCAGAAAGCCCCATCATGCTTAGGATCAAGGAGATGCTGGGGAAAAGCTGGATGGTGAAGGCTGTTCATGTGCATAGAGAAAGTGACAAAGTAGCTGATTGGTTGGCTAGTCATGCTCCTAGAGTGGATTGGAATGCTGTCTGGTATAGTGAACCCTCTGAGGGTTGTAGAGGTCTTTTATTGAGAGACATTAGAGAGAATAGTACCCAGGATATTGGGTAG 897 0.4181 MEHDLNEEPLDPSHSSDFEFDYLSSDESESSDGDWPPVYSQVEISNALREATTDNAQDETRNHQHEVEEEGIVAESGKEVKGNGGSDANKRSLVGSGSSGNFYDCNICFKKAIDPVLTCCGHLFCWPCFYQLPYAYSKAKECPVCNGEVTPTGIVPIYGNASVSCNSHLEFKESESLRVPPRPQAPRIESIWQLPESETETSNLSVIENVTLFHYLVHGFGDGDQSESPIMLRIKEMLGKSWMVKAVHVHRESDKVADWLASHAPRVDWNAVWYSEPSEGCRGLLLRDIRENSTQDIG 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1831g00014 298 Pfam zinc-RING finger domain 105 146 IPR001841 -
Gabi1831g00014 298 MobiDBLite consensus disorder prediction 1 15 - -
Gabi1831g00014 298 SUPERFAMILY RING/U-box 102 155 - -
Gabi1831g00014 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 169 IPR013083 -
Gabi1831g00014 298 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
Gabi1831g00014 298 MobiDBLite consensus disorder prediction 1 70 - -
Gabi1831g00014 298 SMART ring_2 105 145 IPR001841 -
Gabi1831g00014 298 MobiDBLite consensus disorder prediction 54 70 - -
Gabi1831g00014 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 65 198 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1831g00014 Gabi-Chr1831 212435 216059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1831g00014 69 191 C3H Transcription Factor Family AT3G58030 49.593 2.35e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1831g00014 - - cam:101488454 182.57