Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1831g00013 ATGAAATATGATGTTGATGGCATAAACCTGAAAAAAGAACTCAAGTTGTATAGAATGGAGCTTGATTTGAATGAGGAGCCTTTGGACCCAACTCATAGTTCAGTTGTTGAATTTGATTCTATATTGGATGAACTAGAATCTGCCCATGGAGATATACAGGACCGTATTAGACACCTTGAAGCAGTGACTTCCAGAGCTAGGCAGCGTCAGAGGTGGCCGTCGGTTCACTCTCCGATTCAGATAACCAACTTTACGGGAGGATCCGCAGCAGATAATGCTCAAGATGAAGGAATGGAGCATCAGGAAGTTGAAGAAGGAATAGTTGAAAGTGGGAAAGGGGTCAATGGGAAGGGTTCTCATTTAATAGCTAAAGCATTGGGTGGGGTGGAAACAGATGCCTGCAAGGCAGGGGGCAGCACTGGAAATCTTTTTGATTGTAATATATGCTTTGGCAAGGCAAGAGATCCTGTTTTGACATGTTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCATATGCTTATTCAAAGGCTACGGAATGTCCTGTGTGCAATGGAGAGGTCACTGAAACAGGTATTATTCCAATTTATGGCAATGCAAGTGGCAGTAGCAAATGTCAGGATGAATTAAAAGAAGCTGGTTTGAGAGTTCCATCTCGACCTCGAGCTCCTAGAATTGAGAGTACTAGGCAGCAGCTAATAAGCCAAGGAGCATCATCTTCTTCTGTGATCCGAAATATTCGGCAGTTTCATAACCTTGTTAGCGGATTAGGAGAGCAAGTTCAGTCAGAAAGGCCCAATACTGCAACTGATAGAAACAGTATTTTGCTTTCTCAATCTCGCCTGCGGACAGACAGTAATCAACATACTGTTTCCCATCCAGTTTCAAGGTTGTTCGTACAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCATTAAATTCTGCAATGGATTCTGCAGAAAGATTAGTTGAGGACCTTGAATCTCATATGCATGATCACCAGGTAGGAGGAAGCAGGCAGTCGAATCCTCGTGCTGTTAATAGAAATTCAACTTTTAGAGATGCTGCTACAAATCTGCCAGAGAGTCTTGCTCGAGATGTTACTGCAACGAATTCCACAGCCGCAGCTTATGTGCCTCCTTCAAGTAGGAATGTTGACACAATTGCTGTTTTAGGCTCAGAGACAACACATAGGAGGAGAAGAAGAAGAACTGAGGTTTTAAGACGATTTTCAACTGCGCCCAGAAGAAGGAGGCCAAGATGA 1272 0.434 MKYDVDGINLKKELKLYRMELDLNEEPLDPTHSSVVEFDSILDELESAHGDIQDRIRHLEAVTSRARQRQRWPSVHSPIQITNFTGGSAADNAQDEGMEHQEVEEGIVESGKGVNGKGSHLIAKALGGVETDACKAGGSTGNLFDCNICFGKARDPVLTCCGHLFCWPCFYQLPYAYSKATECPVCNGEVTETGIIPIYGNASGSSKCQDELKEAGLRVPSRPRAPRIESTRQQLISQGASSSSVIRNIRQFHNLVSGLGEQVQSERPNTATDRNSILLSQSRLRTDSNQHTVSHPVSRLFVQGAASFSSLSSALNSAMDSAERLVEDLESHMHDHQVGGSRQSNPRAVNRNSTFRDAATNLPESLARDVTATNSTAAAYVPPSSRNVDTIAVLGSETTHRRRRRRTEVLRRFSTAPRRRRPR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1831g00013 423 Coils Coil 312 332 - -
Gabi1831g00013 423 SUPERFAMILY RING/U-box 142 199 - -
Gabi1831g00013 423 Pfam zinc-RING finger domain 146 187 IPR001841 -
Gabi1831g00013 423 ProSiteProfiles Zinc finger RING-type profile. 146 187 IPR001841 -
Gabi1831g00013 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 200 IPR013083 -
Gabi1831g00013 423 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 101 338 IPR045103 GO:0005783|GO:0006511|GO:0061630
Gabi1831g00013 423 Coils Coil 42 62 - -
Gabi1831g00013 423 SMART ring_2 146 186 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1831g00013 Gabi-Chr1831 176719 178716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1831g00013 79 235 C3H Transcription Factor Family AT3G58030 42.767 1.72e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1831g00013 - - cam:101488454 456.447