Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1830g00002 ATGAAGAGAGTAAGGGATGAGGCTCCTCCAAATAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAGTGATGAGCATGTTTACAAATCGTTCTTGAACATTTCCAATATGTACCGCAAAGAGCATAAGGACATAGGTGAAATTTATAGTGAGGTTGCTACCCTGTTTAAGGATCATCGAGATTTGCTTGAGGAGTTCACTAGATTCTTACCAGATAGTTTCGCAGCACCTTCTACACAGCATGCTCCGGATGCTCGAAATTCATTGCAGCGCTTTAGTGAGCGGAGTTCTATGGCACCCATGATGCGGGAAATGCAAGTATATCGACAAAAGAGGCTTCCTTCTCATGATCGTGAGCGTGATCTGAGTGTTGAACACCCTGAGATGGATGATGACAACACAATGATGAACATGCACAAGAAGCGGAGGAAACGTGAGAGTAAGGATATAAGGATTAATCGTGATCAGGATGAGAGAGAACCTGATCATATAAATGCTCAACAATTTAGCAGGGATTTGAACTTGCAGCGCTTTCATGAGAAAAAGAAATCTGTCAAGAAAGCTGAAGGTTTTGGGTTGGCTTCAGACTTTTCTTCTAAGGAAGACAAGGATACCTTAAAGAACATGTATAGTCAAGCATTCAGTTTCTTTGAGAAAGTTAAGGAGAAGTTGAACAGTGCTGATGACTACCAAGCTTTCTTGAAGTGCCTTCATAATTTTTTCGTCAGTGAAATAATAAAAAGGAATGAATTGCAAAATTTGGTAACCGATTTACTTGGAAAGCATCTTGATCTTATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCATAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATACGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTGTAATATTGACTCGACTGAAGCAGAAACAGGAGGAATGGAGTCGGTGTCGTTCAGATTTCAATAAAGTTTGGGCTGAAATTTATTCTAAAAATCACTTAAAGTGA 1557 0.3988 MKRVRDEAPPNKTVEFEEAISFVNKIKKRFQSDEHVYKSFLNISNMYRKEHKDIGEIYSEVATLFKDHRDLLEEFTRFLPDSFAAPSTQHAPDARNSLQRFSERSSMAPMMREMQVYRQKRLPSHDRERDLSVEHPEMDDDNTMMNMHKKRRKRESKDIRINRDQDEREPDHINAQQFSRDLNLQRFHEKKKSVKKAEGFGLASDFSSKEDKDTLKNMYSQAFSFFEKVKEKLNSADDYQAFLKCLHNFFVSEIIKRNELQNLVTDLLGKHLDLMVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASHRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINTETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPVILTRLKQKQEEWSRCRSDFNKVWAEIYSKNHLK 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1830g00002 518 Gene3D Paired amphipathic helix 10 82 IPR036600 GO:0006355
Gabi1830g00002 518 FunFam Paired amphipathic helix protein SIN3 212 287 - -
Gabi1830g00002 518 Coils Coil 418 445 - -
Gabi1830g00002 518 MobiDBLite consensus disorder prediction 157 175 - -
Gabi1830g00002 518 FunFam Paired amphipathic helix SIN3-like protein 11 82 - -
Gabi1830g00002 518 SUPERFAMILY PAH2 domain 9 81 IPR036600 GO:0006355
Gabi1830g00002 518 MobiDBLite consensus disorder prediction 118 148 - -
Gabi1830g00002 518 MobiDBLite consensus disorder prediction 89 104 - -
Gabi1830g00002 518 MobiDBLite consensus disorder prediction 303 328 - -
Gabi1830g00002 518 Pfam Paired amphipathic helix repeat 35 79 IPR003822 GO:0006355
Gabi1830g00002 518 Pfam Paired amphipathic helix repeat 237 282 IPR003822 GO:0006355
Gabi1830g00002 518 Gene3D Paired amphipathic helix 213 286 IPR036600 GO:0006355
Gabi1830g00002 518 ProSiteProfiles PAH domain profile. 12 82 IPR003822 GO:0006355
Gabi1830g00002 518 SMART hdac_interact2seq4b 345 445 IPR013194 -
Gabi1830g00002 518 ProSiteProfiles PAH domain profile. 215 285 IPR003822 GO:0006355
Gabi1830g00002 518 PANTHER SIN3B-RELATED 9 518 IPR039774 GO:0003714
Gabi1830g00002 518 SUPERFAMILY PAH2 domain 216 283 IPR036600 GO:0006355
Gabi1830g00002 518 Pfam Sin3 family co-repressor 347 439 IPR013194 -
Gabi1830g00002 518 MobiDBLite consensus disorder prediction 83 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1830g00002 Gabi-Chr1830 14445 16859 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gabi1830g00002 Sin3_corepress 6e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1830g00002 K11644 - gmx:100807181 791.571