Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1830g00001 ATGGTGGAATTCAATGATTTCCTGGAGTGTTTGGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGTCACTAAGATCATCAAAGTTGGAGGACAAAGACAAAGACAAAGAGCAGAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAGGAGTACATGGGAAAATCCATTCAAGAACTTGACCTCAGTGACTGTAAACGTTGCACTCCCAGCTACCGGCTTCTACCTGCTGATTATCCAATTCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTATCTGTGAGTTCAGGAAGTGAGGATTACTCTTCCGAACATATGTGCAGGAATCAGTACGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATTTGAGCTGGACATGTTATTAGAGTCTGTGAGTTCTGCAGCTAAACGTGCAGAGGAATTATATAATAACATGAATGAAAATAAGATCAATATGGAGACTCTGAACCGTATTGAAGATTACTTTACTGTTCAAAATTTAAGGTGCATTGAACGTCTATATGGTGACCATGGTCTTGACGTTATAGACATATTGCGTAAAAACCCAACTCGTGCGCTCCCTCGTAGGTCTCTTGTTGGCGGCGCGGAGTATGCGTGTAAGACTCTGAAGAAGGGGGATGAGACTGTTTACAGGGAGGTGGAGATAATGCAGCACTTGTCTGGGCATCCTGGGGTTGTGACTCTGCTGGCAGTGTATGAGGAAGCTGATTGCTCTCATCTGGTGATGGAATTATGCTCTGGGGGAAGACTTGTCGACCAGATGTTTAGGGAGGGCCCTTGTTCTGAACAGCGGGCTGCTAATATACTTAAGGAAGTGATGTTGGTCATCAAGTATTGTCATGATATGGGAGTTGTGCACAGAGATATCAAGCCTGAGAATATTCTGCTTACTGCTTCGGGGGAAATAAAGCTTGCTGATTTTGGCCTGGCCATGAGAATTTCTAAGGGTCAGAACTTGACGGGTTTGGCTGGGAGCCCTGCATATGTTGCACCAGAAGTGTTGTTGGGTAGATACTCAGAAAAGGCGGATATATGGAGTGCTGGAGTGCTCCTGCATGCTCTGTTGGTTGGTGTTCTTCCATTTAAAGGGGATTCACAAGAAGCAGTTTTTGAGGCTATTAAGAATTCCAAGCTAGAGTTCCAAACCGGGATGTGGGAATCAATATCTAAACCTGCACGAGATCTTGTTGGGAGAATGCTGACAAGGGATATTTCAGCAAGGATAACAGCTGATGAAGTACTTAGTAAGTTTATGGTAGATTATTAA 1335 0.4382 MVEFNDFLECLENIDGFLAGVMSKKSLRSSKLEDKDKDKEQKREMDGAKEKERYREKEYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVSSGSEDYSSEHMCRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNMNENKINMETLNRIEDYFTVQNLRCIERLYGDHGLDVIDILRKNPTRALPRRSLVGGAEYACKTLKKGDETVYREVEIMQHLSGHPGVVTLLAVYEEADCSHLVMELCSGGRLVDQMFREGPCSEQRAANILKEVMLVIKYCHDMGVVHRDIKPENILLTASGEIKLADFGLAMRISKGQNLTGLAGSPAYVAPEVLLGRYSEKADIWSAGVLLHALLVGVLPFKGDSQEAVFEAIKNSKLEFQTGMWESISKPARDLVGRMLTRDISARITADEVLSKFMVDY 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1830g00001 444 Coils Coil 144 174 - -
Gabi1830g00001 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 307 319 IPR008271 GO:0004672|GO:0006468
Gabi1830g00001 444 MobiDBLite consensus disorder prediction 29 54 - -
Gabi1830g00001 444 CDD STKc_CAMK 217 438 - -
Gabi1830g00001 444 SMART serkin_6 195 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1830g00001 444 SUPERFAMILY Protein kinase-like (PK-like) 214 438 IPR011009 -
Gabi1830g00001 444 SMART hdac_interact2seq4b 71 171 IPR013194 -
Gabi1830g00001 444 Pfam Sin3 family co-repressor 73 165 IPR013194 -
Gabi1830g00001 444 Pfam Protein kinase domain 220 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1830g00001 444 ProSiteProfiles Protein kinase domain profile. 184 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1830g00001 444 Gene3D Transferase(Phosphotransferase) domain 1 211 443 - -
Gabi1830g00001 444 PANTHER SERINE/THREONINE-PROTEIN KINASE 217 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1830g00001 Gabi-Chr1830 170 3333 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1830g00001 217 437 EF-hand Containing Proteins AT2G38910 44.589 1.15e-64 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gabi1830g00001 Pkinase 2.9e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1830g00001 - - gmx:100812729 388.267