Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1825g00001 ATGTACTTTCTTAGAAATTTTGGAGTTGGATTGAATGGTAAAGGTTTCAAGGCAACTAGGCATGTTTACAGAATTTCTTTCAGCTTAAGGACAAATGTTAAGGCCATTGCTGATGCTACCATACCTGTCAATTATGTCATCGGTTTACTGACTGGAACTAGCGAAGTTGAAGAGCATGATGTGTTTGGTAGGAAAGCAAAAAAAATTATGTTGGAGCTTGACAACCTCAGGCTTGGAAATGTTTCAGCGGATTGTATTCGTGGATTGTCCCAGTTGTCTACTCAATCGACATATTCCTTTGAGAATGATTTTCCTAAAAATACAGAAAGAAAGTGTATTACTGATATTAAAATTTCTACCGAGGTTATGACGTGTATTGCTTACGGAACTATCAAAGCAATTGAGAGTAAATACAACTGGTGGTACAAATCCTGTAAGAAATGCCCGTATTCTGTTTGTGAAGATTATGAGAAATGGTTTTGTAAAAACTGCCAAAAACATTGGAGTGATTATCAACCAAGATTCAGTGTTCAAGTCAGAGTTGTTGATAACACCGATTCTGCATCGTTCATTCTCTTTGATAGAGATTGTGTTACTTTGTTGGGTATGAGTGCTTCTGATTTGCGTGAATTGCAATACAAGAGGGGTGCTGATTTGGAACATTATCCAAAAGAATTTGATGTTCTTGTTGACAAGTCCATGCTGTTCAAGATTAATGTTAGAAAAAACAATTTTGACTCATACAGTGAGCCTAAATATCAAGTTTCTAAAGTTTGCACCGACGAAACTATTATGTCTTCCTTCATCAAGTCTGCAACAGAATTAAATGATGAAACTTTGTTTGATCAAGCTTTCGACAATGACATTGTTGCTGCTGAAAATGGAAGAGCTGCGGATGTTGCGAGTCAGACATGTGAAAGTGCAGATCCTGTTAATGATTCTCTGTCTATGATGACACCGTCTGTCAATTCTAATGAATTTATAGACGAAATTGGTGAACGCTCTGTTGTCCATACAATTAAAAAAATTAAATTGGAGAAATTTTTTGATGCAGCGAATGAAGACAACGTGGCAGATTAA 1080 0.363 MYFLRNFGVGLNGKGFKATRHVYRISFSLRTNVKAIADATIPVNYVIGLLTGTSEVEEHDVFGRKAKKIMLELDNLRLGNVSADCIRGLSQLSTQSTYSFENDFPKNTERKCITDIKISTEVMTCIAYGTIKAIESKYNWWYKSCKKCPYSVCEDYEKWFCKNCQKHWSDYQPRFSVQVRVVDNTDSASFILFDRDCVTLLGMSASDLRELQYKRGADLEHYPKEFDVLVDKSMLFKINVRKNNFDSYSEPKYQVSKVCTDETIMSSFIKSATELNDETLFDQAFDNDIVAAENGRAADVASQTCESADPVNDSLSMMTPSVNSNEFIDEIGERSVVHTIKKIKLEKFFDAANEDNVAD 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1825g00001 359 CDD RPA1_DBD_C 125 258 IPR047192 -
Gabi1825g00001 359 PANTHER OS03G0429900 PROTEIN 105 279 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gabi1825g00001 359 Gene3D - 96 285 IPR012340 -
Gabi1825g00001 359 SUPERFAMILY Nucleic acid-binding proteins 108 259 IPR012340 -
Gabi1825g00001 359 Pfam Replication factor-A C terminal domain 128 258 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1825g00001 Gabi-Chr1825 20394 22740 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1825g00001 131 258 Core DNA Replication Machinery Family AT5G08020 25.581 1.53e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1825g00001 - - vun:114169438 164.081