Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1823g00015 ATGGGAACCAAGTCCCTTTGCTTTTCATCATTGTTATTATGTGTTTTCTTGCTTCACATTCATCTCCACAAAGGGGTAGTGGTCGTTGTTGCCCAAGAGATAGCAGGATCAGAAAGTGAAGCACTGGGACTAGCAAGACCAGAAAGGGAAGCAATTGAAATTATCATTGGCGGTGGAGCTGGCGGCGGTCATGGCCCTGCTCCTTCCCCTGAATGCCCACCTCCCTCACCACCACCATTGAGCCGGTTGGAGAAAGCACGCCGCGTGCTTCTAAAGTTCAAAACTTCCATTAATGACCCGAAAGGGTACACACGAAACTGGAACCAGCAAACCGACGTTTGTAAATTCAACGGTGTACGATGTGCACGATATCCAAACACAAGCGAGTCAGCAGTTGCAGGATTGGACTTTAACCAAGCTGCGATCTCGGCGTGCGGCAGTGCACCTTTGTCCCTTTCAGGAATTTTGGACAAAATAACAGAATTGACATTCTTCCACGTTAACTCCAACAACTTCTCTGGTGCCATCCCAAGCCAAATCACAACATACCCTTATTTCTTCGAGCTTGACCTCAGTAACAACAAACTTGTCGGTGAATTTCCAAAGGTTGTGGTTCAAGCCACTAAACTCGTGTTCTTGGACCTCAGGTTCAACAATTTCCACGGGCCAGTTCCCTCACAGTTGTTTAATATGGATCTCGATGTGATTTTCATCAACAACAACCAATTGTGTCAAAATCTCCCTGATAATTTTGGTTCCACCCCTGCCAGGTACCTCACTTTCGCTAACAACCAATTCACAGGTCCAATCCCAAAGAGTATTGGCAATGCTTCGAAAACCCTCACCGAAGTGCTTTTCTTAGGCAACAAATTTGAAGGGTGCTTGCCATACGAAATTGGGTACCTTCAAAAGGCTGTAGTCTTTGATGTGAGTAGAAACTACTTAACTGGTCCAATCCCATACTCCTTTGCCTGCTTGAGCAAGATTCAGTTTCTGAATTTAGCACACAACAAGTTCTATGGTCTTGTTCCCGACAGTGTTTGTATGCTCCCGGGGATTCGCAACAATGGGAACCTGTCTTTATCGGACAACTATTTCACTGAGGTTGGGGCTGAATGTTGGAAGCTGATAAAATCCAAAGTGTTGGATGTGAGCAAAAATTGCATTCCTGGGCTCCCAAATCAAAGATCACATCAAGAGTGCTATGAGTTTTTGTCCAAGGTGAAGCCTTGCCCAAATCATGAGTACTTGAGTTACATTCCTTGTAAGGGACACTGGGAGAAACAGCAGAGCACTATCCCTGTTCCTCAGGCAACCGCTTTACCCCCTGAGCCGGTAACTTACAAGTCTCTCAAACCGCATAGGTTGAGATTGTGA 1377 0.4575 MGTKSLCFSSLLLCVFLLHIHLHKGVVVVVAQEIAGSESEALGLARPEREAIEIIIGGGAGGGHGPAPSPECPPPSPPPLSRLEKARRVLLKFKTSINDPKGYTRNWNQQTDVCKFNGVRCARYPNTSESAVAGLDFNQAAISACGSAPLSLSGILDKITELTFFHVNSNNFSGAIPSQITTYPYFFELDLSNNKLVGEFPKVVVQATKLVFLDLRFNNFHGPVPSQLFNMDLDVIFINNNQLCQNLPDNFGSTPARYLTFANNQFTGPIPKSIGNASKTLTEVLFLGNKFEGCLPYEIGYLQKAVVFDVSRNYLTGPIPYSFACLSKIQFLNLAHNKFYGLVPDSVCMLPGIRNNGNLSLSDNYFTEVGAECWKLIKSKVLDVSKNCIPGLPNQRSHQECYEFLSKVKPCPNHEYLSYIPCKGHWEKQQSTIPVPQATALPPEPVTYKSLKPHRLRL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1823g00015 458 SUPERFAMILY L domain-like 85 389 - -
Gabi1823g00015 458 Gene3D Ribonuclease Inhibitor 255 420 IPR032675 -
Gabi1823g00015 458 Gene3D Ribonuclease Inhibitor 83 254 IPR032675 -
Gabi1823g00015 458 Pfam Leucine rich repeat N-terminal domain 86 121 IPR013210 -
Gabi1823g00015 458 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 29 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1823g00015 Gabi-Chr1823 166987 168797 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1823g00015 82 407 Leucine-rich Repeat extension Gene Families AT3G24480 42.073 3.46e-76 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1823g00015 - - psat:127108214 567.77