Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1823g00014 ATGAGGAAACCTTGCTGTGATACCAAAGACATGAACAAAGGAGCTTGGTCCAAACAAGAAGACCAGAAACTTATAGATTATATCAAGAAACATGGCGAGGTTTGTTGGCGTACACTCCCTCAAGCTGCAGGTTTACTTCGGTGTGGTAAAAGTTGTAGGCTGAGATGGATAAACTATCTACGGCCAGACCTTAAAAGGGGAAACTTTGGTGAAGATGAAGAAGATCTCATCATCAAGCTTCATGCACTGCTAGGCAACCGGTGGTCACTAATAGCTGGTAGATTGCCTGGTCGTACAGATAATGAAGTGAAGAACTATTGGAACTCTCATATAAGAAGAAAACTCATTAGCAAGGGTATTGACCCAAATAACCATCGTTTAAGCAAGAAAATCCCTACCCTTCAAAATCCACCAATGTCTGATAATTCAAAATCTTCAGACTTGAAAGACAATTGCAAGAATGTGACAAGTAAGGCCAATGTTGACAGTTATGGTGAAATCTCAGATGCAGCAAGTGGCGAGGATGAGTCATATGCCCTGCCAGATTTAAACCTTGATCTCACTATGAGCGTTCCTTCAGCTTCTCCCAGTATCGCTGAAATCAATCTAAAACCAATTCATGAATCAAAATCATCAAGGAAACTGCATTTTGCTTCCTCTTCAACACTTGTTTTGTTTAAGTAA 684 0.4035 MRKPCCDTKDMNKGAWSKQEDQKLIDYIKKHGEVCWRTLPQAAGLLRCGKSCRLRWINYLRPDLKRGNFGEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLISKGIDPNNHRLSKKIPTLQNPPMSDNSKSSDLKDNCKNVTSKANVDSYGEISDAASGEDESYALPDLNLDLTMSVPSASPSIAEINLKPIHESKSSRKLHFASSSTLVLFK 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1823g00014 227 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Gabi1823g00014 227 FunFam MYB-related transcription factor 12 65 - -
Gabi1823g00014 227 SMART sant 65 113 IPR001005 -
Gabi1823g00014 227 SMART sant 12 62 IPR001005 -
Gabi1823g00014 227 Gene3D - 5 65 - -
Gabi1823g00014 227 CDD SANT 68 111 IPR001005 -
Gabi1823g00014 227 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 157 - -
Gabi1823g00014 227 MobiDBLite consensus disorder prediction 121 152 - -
Gabi1823g00014 227 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Gabi1823g00014 227 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Gabi1823g00014 227 CDD SANT 15 60 IPR001005 -
Gabi1823g00014 227 Gene3D - 68 156 - -
Gabi1823g00014 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Gabi1823g00014 227 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Gabi1823g00014 227 FunFam Transcription factor MYB7 68 160 - -
Gabi1823g00014 227 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Gabi1823g00014 227 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Gabi1823g00014 227 MobiDBLite consensus disorder prediction 128 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1823g00014 Gabi-Chr1823 141747 143701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1823g00014 2 192 MYB Transcription Factor Family AT4G38620 55.660 1.01e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gabi1823g00014 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1823g00014 K09422 - gmx:100814923 346.665