LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi1823g00012	ATGGCGCATAGGTTGCTGAGGGACCACGAAGCCGACGGTTGGGAGCGCTCCGATTTCCCCATCATCTGCGAATCCTGCCTTGGAGACAGCCCTTATGTTCGAATGACAAAAGCAGACTATGACAAGGAGTGTAAGATTTGTACACGGCCATTTACTGTGTTTAGATGGAGACCTGGTCGAGATGCTAGATATAAGAAAACTGAGATATGCCAGACATGTAGCAAATTGAAGAATGTTTGCCAAGTGTGCCTTCTGGATCTTGAATATGGACTCCCAGTTCAAGTTCGCGACACAGCTCTCAGTATCGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCACGACCGCAGGGCTCGAGCTGGTATAGATTATGAATCCTCTTTTGGTAAAGCACGCCCAAATGATACTATTCTGAAGCTTCAAAGGACAACACCATATTACAAAAGAAACCGGGCACATGTTTGCAGTTTCTACATAAGGGGTGAGTGTACTAGAGGAGCTGAGTGCCCTTATAGGCATGAGATGCCTGTAACTGGGGAGTTGTCTCAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCGGTGGCTATGAAGCTACTTGGCAAGGCAGGAGAGATGACCTCTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTATATGTTGGTGGACTGGATGCTAGGGTCACTGAGCAGGATTTGCGGGATAACTTCTATGCCCATGGAGAAATCGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACCTATACAACCCGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAACTGGTTATTAAAGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGTCAGCAAAACCTGAGTCAGATGTCTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGTTGCCTCGAGCAGTTATATCACAGCAGCAGAACCAGGATCAAACCCAAGGAATTGTTTACTACAACAATCCACTTCCTCCTCCTCCTCAGCAGGAAAGAAGCTATTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTGTCCCATCTCAAGATGGTCCTCCTGGTGGGCCTACTGGGTCTGGGGAGAACAAACCCAGCTTGGAGAAGCAGCAAATGCAACATTATCCCCATCCAATGATGCCACCTCCACCTGGCCAATATCATCATCAGTATTACCCTCCATATGGTTATATGCCACCAGTTCCCCCTTATCAACAGTACCCACCACCATACAATGCTCCACTGGCTACATCACAGCCACCAGCTCCAAATCATCCATATCAGCTTTCTATGCAGCCAGGGTCTTCACAGACTGGGTCTGCACCAGCCGAAACTGGAACATCAACATCAGGGTCACAGCAGCAGTGA	1446	0.4744	MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKADYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDAIPKSDVNREYFAEEHDRRARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEAPEDESIKTLYVGGLDARVTEQDLRDNFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQSAKPESDVSDQARQQASVAHSGLLPRAVISQQQNQDQTQGIVYYNNPLPPPPQQERSYYPSMDPQRMGALVPSQDGPPGGPTGSGENKPSLEKQQMQHYPHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQYPPPYNAPLATSQPPAPNHPYQLSMQPGSSQTGSAPAETGTSTSGSQQQ	481

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi1823g00012	481	FunFam	Zinc finger CCCH domain-containing protein 4	149	208	-	-
	Gabi1823g00012	481	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	230	288	IPR000504	GO:0003723
	Gabi1823g00012	481	MobiDBLite	consensus disorder prediction	402	447	-	-
	Gabi1823g00012	481	PANTHER	PRE-MRNA-SPLICING FACTOR RBM22	1	378	IPR039171	GO:0003723
	Gabi1823g00012	481	FunFam	Zinc finger CCCH domain-containing protein 40	213	309	-	-
	Gabi1823g00012	481	SMART	rrm1_1	229	297	IPR000504	GO:0003723
	Gabi1823g00012	481	SUPERFAMILY	CCCH zinc finger	159	182	IPR036855	GO:0046872
	Gabi1823g00012	481	Pfam	Torus domain	151	194	IPR032297	-
	Gabi1823g00012	481	Gene3D	-	149	212	-	-
	Gabi1823g00012	481	Gene3D	-	213	310	IPR012677	-
	Gabi1823g00012	481	MobiDBLite	consensus disorder prediction	448	481	-	-
	Gabi1823g00012	481	ProSiteProfiles	Zinc finger C3H1-type profile.	157	184	IPR000571	GO:0046872
	Gabi1823g00012	481	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	228	301	IPR000504	GO:0003723
	Gabi1823g00012	481	SMART	c3hfinal6	157	183	IPR000571	GO:0046872
	Gabi1823g00012	481	MobiDBLite	consensus disorder prediction	343	481	-	-
	Gabi1823g00012	481	MobiDBLite	consensus disorder prediction	302	321	-	-
	Gabi1823g00012	481	SUPERFAMILY	RNA-binding domain, RBD	221	307	IPR035979	GO:0003676
	Gabi1823g00012	481	MobiDBLite	consensus disorder prediction	306	320	-	-
	Gabi1823g00012	481	CDD	RRM_RBM22	227	300	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi1823g00012	Gabi-Chr1823	119006	123443	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi1823g00012	229	445	Eukaryotic Initiation Factors Gene Family	AT2G23350	27.542	2.06e-06	48.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi1823g00012	K12872		-	gmx:100779917	817.764