Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1823g00009 ATGTGCGCCGGGGCTGGAGGTGTGTCCTCCTCCGCCACCGCCATTGCCGCCGATGCCATGTTTAAGAAGGATTGCACCGATCTGGTTCGCAGGATCTCCCTCCTTACCCACTTGTTCGAGGAGATTGGGGAACTGAACAAGGTTTTCGATTCTGCTTCCAGTTCTTCCGCTACTGCTTCTGCTTCTGCTTCTTCGTGGTCCTCTGATCTGGTCCTCGCTCTTCACTCTGCTAAGCGATTGCTTTCGGTGGCTAGGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACCATTGTCTTCCAATTTCAGTGTGTGACATGGAAATTGGAAAAATTATTAAGCAACTTACCATATGACAATTTAGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTAAGAACACAGTTAAGAAGAGCTACAGAAAAATATGGGTATATGATTTCAACAATGCCATCTTATGAATTATCCCAGCCTCTGGATCAAGAACTTAGTCAGGTTCTTGGCAAATCTCTGAGTGGATTGCACAAACAAAACAGCTGTCCTGAACATTTATCAGAACTAGACAGCATTCCTAAAATCAATGGAGGGAAAAGTTGCAGCACATATCGAGCAGGATCTCGCTTGGAAAGAGCAAGGAGCATTTCTGAGGTTTCCTTATCAAATGTAACTGATCCTGAAAGTCAAGAGATTTCTGAGAGAAAAAGTCAACCTCAAGTTAAAAAGCCTGGAGCAATAGTAATTCCTGAAGATTTTCTATGCCCTATATCCTTGGAATTAATGAGGGATCCCGTTATTGTGGCCACCGGTCAGACATACGAGAGATCTTACATACAGAGATGGATAGATTGTGGTAATGCAACATGTCCGAAAACTCAGCAGAAGCTCCAACATTTGACCCTTACACCTAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGCGTAGAGCACAACATTGAGCAGCCAACTGGACTAACTAATGGCAAAATAAAAAAGAGTGATGGATCGTTCAGAGATGTTACTGGTGACATAGCAGCAATTGAAGCTCTGGTCCAGAAGCTCTCCAGCCAGTCTGTTGAGGAGCGTAGAGCAGCTGTTACTGAAATTCGATCACTATCCAAACGAAGCACTGACAATAGGATACTGATTGCTGAAGCCGGAGCAATTCCAGTTCTAGTGAACCTTTTAACTTCAGAAGATGTATTGACGCAAGACAATGCAGTTACTTCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCCATTCCATCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCAGCGGCAACCCTCTTTAGCTTGTCACTTGCTGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATACCCGCATTGGTGGAATTGCTCCAAAATGGGAGCCCTAGAGGGAAGAAGGATGCAGCAACAGCATTGTTTAATTTGTGCATTTATCAAGGGAACAAGGGCAGGGCCATTAGGGCAGGGATCATCAAAGCATTGTTGCTGATGCTTACAGATTCAAGCAAATCAATGATTGACGAAGCCCTAACAATAATGTCGGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATAGTAAAAGCCAGCACTATACCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGCCGCCATTTTACTTGCCTTATGCAAGAGGGATGCTGACAATCTTGCTTGCATAAGTAGACTCGGTGCTGTCATACCTCTTTCTGAACTTGCTCGGAGTGGTACAGAGAGGGCCAAACGGAAAGCTACTTCATTATTGGAGCATCTTCGTAAGTTACAACAGGTTTGA 1893 0.44 MCAGAGGVSSSATAIAADAMFKKDCTDLVRRISLLTHLFEEIGELNKVFDSASSSSATASASASSWSSDLVLALHSAKRLLSVARNFRSNCSSDGAAKTIVFQFQCVTWKLEKLLSNLPYDNLDISEEVKEQVDLVRTQLRRATEKYGYMISTMPSYELSQPLDQELSQVLGKSLSGLHKQNSCPEHLSELDSIPKINGGKSCSTYRAGSRLERARSISEVSLSNVTDPESQEISERKSQPQVKKPGAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNATCPKTQQKLQHLTLTPNYVLRSLITQWCVEHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIEALVQKLSSQSVEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTSILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIIKALLLMLTDSSKSMIDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAILLALCKRDADNLACISRLGAVIPLSELARSGTERAKRKATSLLEHLRKLQQV 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1823g00009 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 391 433 IPR000225 GO:0005515
Gabi1823g00009 630 FunFam RING-type E3 ubiquitin transferase 250 325 - -
Gabi1823g00009 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 249 324 IPR013083 -
Gabi1823g00009 630 PANTHER U BOX DOMAIN-CONTAINING 20 626 - -
Gabi1823g00009 630 MobiDBLite consensus disorder prediction 222 243 - -
Gabi1823g00009 630 SMART Ubox_2 254 317 IPR003613 GO:0004842|GO:0016567
Gabi1823g00009 630 FunFam RING-type E3 ubiquitin transferase 530 629 - -
Gabi1823g00009 630 CDD RING-Ubox_PUB 252 304 IPR045210 -
Gabi1823g00009 630 Pfam U-box domain 251 322 IPR003613 GO:0004842|GO:0016567
Gabi1823g00009 630 Gene3D - 427 529 IPR011989 -
Gabi1823g00009 630 Gene3D - 333 426 IPR011989 -
Gabi1823g00009 630 SMART arm_5 462 502 IPR000225 GO:0005515
Gabi1823g00009 630 SMART arm_5 544 584 IPR000225 GO:0005515
Gabi1823g00009 630 SMART arm_5 380 420 IPR000225 GO:0005515
Gabi1823g00009 630 SMART arm_5 503 543 IPR000225 GO:0005515
Gabi1823g00009 630 SMART arm_5 421 461 IPR000225 GO:0005515
Gabi1823g00009 630 ProSiteProfiles U-box domain profile. 250 324 IPR003613 GO:0004842|GO:0016567
Gabi1823g00009 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Gabi1823g00009 630 FunFam RING-type E3 ubiquitin transferase 329 529 - -
Gabi1823g00009 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 473 515 IPR000225 GO:0005515
Gabi1823g00009 630 SUPERFAMILY ARM repeat 350 624 IPR016024 -
Gabi1823g00009 630 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 349 391 IPR000225 GO:0005515
Gabi1823g00009 630 Pfam Armadillo/beta-catenin-like repeat 381 419 IPR000225 GO:0005515
Gabi1823g00009 630 Pfam Armadillo/beta-catenin-like repeat 463 501 IPR000225 GO:0005515
Gabi1823g00009 630 SUPERFAMILY RING/U-box 251 325 - -
Gabi1823g00009 630 Coils Coil 126 146 - -
Gabi1823g00009 630 Gene3D - 530 630 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1823g00009 Gabi-Chr1823 88635 91747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1823g00009 5 629 U-box Gene Family AT1G23030 62.500 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1823g00009 - - gmx:100815448 1034.63