Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1823g00002 ATGATAATGGATTCTTATAGAGAAGGTTCATCGTCATCTTATTACAACATTCTTGGTGTTAGTTCTGATTCTTCCATCGATGAAATAAGGCGTGCTTATAGGAAGCTTGCAATGATGGAACATTATGTTCTAAATGTGAGGTGCGTGTTTCTGAATCAAATACAGCAATGGCATCCAGATAGGTGGACAAGAACCCCTTCTTTACTAGATGAAGCCAACCGCAAATTCCAACAAATTCAAGAAGCTTATTCAGTGTTATCTGACCACAAGAAAAGAACCATGTACGATGCTGGCTTGTATGATCCTCAAGAAGAAGAGGATGAGGGATTTTCTGATTTTGTGGAAGAAATGGTGTCCCTTATGGCTCAAGTGAGGAAAGAGGGAAAGGATTATGGTTTGGAGGAGTTGCAGTCTATGTTCATGGAAATGGTTGAAGGATTCGAGTATCCTTCAATGTACTGTGGGGCACCTTCGGGGATTGATGAATCCCGGTGCTTAAAGAGGATGCGTTTTGACACAACCGTGATGGAAGATAAAGGGTCACATTTTCAAGTACCTGGCTTTAACTTGTATGAAACAAGGGGTTATTGTAATTAA 597 0.4037 MIMDSYREGSSSSYYNILGVSSDSSIDEIRRAYRKLAMMEHYVLNVRCVFLNQIQQWHPDRWTRTPSLLDEANRKFQQIQEAYSVLSDHKKRTMYDAGLYDPQEEEDEGFSDFVEEMVSLMAQVRKEGKDYGLEELQSMFMEMVEGFEYPSMYCGAPSGIDESRCLKRMRFDTTVMEDKGSHFQVPGFNLYETRGYCN 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1823g00002 198 ProSitePatterns Nt-dnaJ domain signature. 76 95 IPR018253 -
Gabi1823g00002 198 SMART dnaj_3 12 91 IPR001623 -
Gabi1823g00002 198 ProSiteProfiles dnaJ domain profile. 13 99 IPR001623 -
Gabi1823g00002 198 PANTHER PUTATIVE, EXPRESSED-RELATED 8 149 - -
Gabi1823g00002 198 PRINTS DnaJ domain signature 71 91 IPR001623 -
Gabi1823g00002 198 PRINTS DnaJ domain signature 33 48 IPR001623 -
Gabi1823g00002 198 PRINTS DnaJ domain signature 15 33 IPR001623 -
Gabi1823g00002 198 SUPERFAMILY Chaperone J-domain 12 41 IPR036869 -
Gabi1823g00002 198 Pfam DnaJ domain 14 41 IPR001623 -
Gabi1823g00002 198 Pfam DnaJ domain 47 96 IPR001623 -
Gabi1823g00002 198 CDD DnaJ 14 88 IPR001623 -
Gabi1823g00002 198 Gene3D DnaJ domain 10 148 IPR036869 -
Gabi1823g00002 198 SUPERFAMILY Chaperone J-domain 50 102 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1823g00002 Gabi-Chr1823 8960 10651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1823g00002 14 97 C2H2 Transcription Factor Family AT1G74250 38.824 9.41e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1823g00002 - - gmx:100306079 274.633