Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1822g00006 ATGGTAAGGTCCGGGAGAACACAAGAGACTTCTGAGGATCAACCCGATCCTATCCTGACTGCATTGGCTGAGATGCAGGCGGCTAGGTTAGCCGATCGGGAGGCCACTAGATTGGCCAACACGACAATGATGGACGCTGATCGCGAGGTGAACCGGATAGCCGCAGAAGAAGTTTGTGAAGCGAACCGGAGGACCATTGAGGATGTCCTCGAGGAGAACATGATGGCGAACATGACGATGATGAGAGTCATGTTGGAGGAGATGAGGGCTGGTCCTGCTGTAGGCCAGTTACCACCGCCACCACCGCAACCACCGCCGCTGCCTCCACCTAGTGTTCAGGATGAGAGCTTGAGTCACTTTGGCAGTGCTGCTCATGTCGCTGAGACGAGAGAGACTCTTGTAGAGCCTGCTGAGGATCGTGATGTGATAGATCGCCGGCTGAATGCTTTCAGAAAGCATAAGCCACCTGTGTTTGAAGGGTCTTTGGATCCTATTGCCGCGGCGAGATGGCTGGGATCGCTGGACAAGATATTTCGGGTCATGCTGTGTACAGACCCACAGAAGCTGATGTTGGAACTATCAAAGCGAAAAGTTCAGGGGATAGAAAAGGTGAAAATTGGTGATCTCGGATTGGCTGCTATAGTGGGACGGAGCCATGCTGCACATTCAATTTTAGGGACACCTGAATATATGGCACCCGAGCTGTATGAGGAAGATTACACTGAGATGGTGGACATATACTCTTTTGGAATGTGTTTGCTTGAAATGGTCACAATGGAGATACCCTACTGTGAATGTGACAGTGTCGCCAAGATATACAAAAAGGTCACCATGGGAATTAAGCCTCAGTCCTTGAGCAAAGTCTCAGATCCAGAGGTGAAGGCTTTCATTGAGAAGTGCATAGCACAACCAAGGGCAAGACCTTCAGCCACGGATCTCCTTAATAGTACTCTTCTTGTTTAG 963 0.5016 MVRSGRTQETSEDQPDPILTALAEMQAARLADREATRLANTTMMDADREVNRIAAEEVCEANRRTIEDVLEENMMANMTMMRVMLEEMRAGPAVGQLPPPPPQPPPLPPPSVQDESLSHFGSAAHVAETRETLVEPAEDRDVIDRRLNAFRKHKPPVFEGSLDPIAAARWLGSLDKIFRVMLCTDPQKLMLELSKRKVQGIEKVKIGDLGLAAIVGRSHAAHSILGTPEYMAPELYEEDYTEMVDIYSFGMCLLEMVTMEIPYCECDSVAKIYKKVTMGIKPQSLSKVSDPEVKAFIEKCIAQPRARPSATDLLNSTLLV 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1822g00006 320 SUPERFAMILY Protein kinase-like (PK-like) 203 315 IPR011009 -
Gabi1822g00006 320 MobiDBLite consensus disorder prediction 94 112 - -
Gabi1822g00006 320 ProSiteProfiles Protein kinase domain profile. 1 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1822g00006 320 Gene3D Transferase(Phosphotransferase) domain 1 151 320 - -
Gabi1822g00006 320 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 203 319 - -
Gabi1822g00006 320 Pfam Protein kinase domain 202 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi1822g00006 320 MobiDBLite consensus disorder prediction 92 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1822g00006 Gabi-Chr1822 143763 153842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1822g00006 166 314 MAP Kinase Kinase Kinase AT5G55560 65.132 2.19e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Gabi1822g00006 Pkinase 6.7e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1822g00006 K08867 - cave:132181503 214.157