Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1821g00002 ATGGCTTTTTGGGGTGTTGAAGTAAAACCAGGAAAGCCTTTTACTCATGCACACAATGACTGGAAAGGACGCCTTCATATTTCAATGGCCACTTTGGGATTGGGCACTGCAACAGCGAAAAGCACACTGCAGTGTAATGTTGGAAATAGGAGCCCTGTGTATCTGTGTTCTCTGTATCCTGGAACTACTGAGTCATTGCAATTGAATCTTGAATTGGAGGAAGTTGAACAAGTTATTTTCTCAGTAATTGGACCTCGCAGTATTCATCTTTGTGGTTACTATCTCGCTAGTGGCCGCCATAACAATATCAACGATGATTCGGAATCATATGGGGAAGATATTGCAGATACAGAAACAGAGAGATCTAATCACAGTGACGAAGATGAGTATGAAGATAGTTTTATTGATGATGACGGTGATCCAGTGGTTTTCCCATCATCTCCAATTTCTAATGAAGAGGAAGCCTCTGATGATAACAGACCAAAAGGTACGAAAAGTGGCTTTCGGCGGCTTAGGAGGAAGTACCAATCAGTAGAATCGGATGATGATGGCTCTTTTGAAGAAAAGATAATTGTCAATGACAGTATAAATGACCAAACCAAGGAAACTGGTAATGAAGATAGCCTGCCAATTTCACCCCTTTACAAGAATAAAGCCTCTGGAAGGGTCTTGGACCAGGAAATGGATGATAGTGTTGACAGAGGAGCAGGTGATGGCAGCAAGAAGAATGGTGAAGATGGTGGAAATAGTATTATTGAAACAAATTTAAAAACTGACCACGTCCTTGGAGATAGTCAGATGCATAGGGAAGCTGAACTGTCAAGCCACCTAGTAGATCCTTGTTCTGTTCTTGATGTTGGGGTTGGGGATATTAAAAAGCTAAAAAAGAAAAAGAAAGGCAAGGAAAAAGAAACAAAGAGTTCTTGTAATGGCCATTTTATCAAACTAGATAATGTTGTGCCAGATGGGCCAAAAATGGACAAGATGACTCAGGATTTTCTGGAAGGAAATGAACAATACCAGCAGCATGCTGATGATAAGGAAACTGAAACCAAGGATAAAATACTACCTTCTTCTGAGGTTGGTCTTGGACAGGGTGAAAAGTCAAAGAAGAATAGGAAAGAACAGTCAAAGAACGTTCATATAAATGAACAAAATAAACAGCACACTGTTAATGAGGATGTAAAGATTTCAGACAATGTTGGATTGCCTTCTGCTGAAATGAGTCTTGAAAGGAGTAGAAGAAAGAGGAAAAATAAAGATCAGGTAAACAAAGGTTTACATCTTGAAGGTGACTATGGACACGTTGAAGATATTATACAAGAGTATAAAGCCAACAGAGATACAATAGATTCCAATAATCTGATTCATAAATTTTCCGAGAGAAAAGAGCATCATCAGGAGCTAACAAATGAAAAAAGTGTGGAGGATGGTGCTCATTACTTTCCTGATGGAAATCAGTCTGAGGATAGAAAAGTTAAGAAAAGGAAGAAAAAGAGTAAAAGTCAGGGCAATGTGGAAGTTGTAAATTCTGATATGCCTCTATCTGTTGAGCAAAGTAGGGAGACAATAGAGGAGGGTGGAAACAAGAGGGAAGATGCAAAGACTTCCCAAGTTAGAACATTGTCAAATGGACTAGTTATTCAAGAGCTAGAGATGGGGACAGAAGATGGAAAAATTGCTGCATCAGGGAAAAAGATCAGCATTTATTACACTGGAAAGTTGAAGGAAAATGGAGCAATATTTGAGTCAAATGCTGACCAAGCTCCTCTCAAATTTCGCCTTGGGAAAGGAAAAGTTATGAAGGGTTGGGATGTTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTTGTGATCCCACCATCAATGACGTCTTCGAGTGATGAACCCAATGCCAAAATACCTCCAAATTCATGGCTGGTTTATGACATCGAACTGGTTAAAGTTCATTGA 1959 0.3961 MAFWGVEVKPGKPFTHAHNDWKGRLHISMATLGLGTATAKSTLQCNVGNRSPVYLCSLYPGTTESLQLNLELEEVEQVIFSVIGPRSIHLCGYYLASGRHNNINDDSESYGEDIADTETERSNHSDEDEYEDSFIDDDGDPVVFPSSPISNEEEASDDNRPKGTKSGFRRLRRKYQSVESDDDGSFEEKIIVNDSINDQTKETGNEDSLPISPLYKNKASGRVLDQEMDDSVDRGAGDGSKKNGEDGGNSIIETNLKTDHVLGDSQMHREAELSSHLVDPCSVLDVGVGDIKKLKKKKKGKEKETKSSCNGHFIKLDNVVPDGPKMDKMTQDFLEGNEQYQQHADDKETETKDKILPSSEVGLGQGEKSKKNRKEQSKNVHINEQNKQHTVNEDVKISDNVGLPSAEMSLERSRRKRKNKDQVNKGLHLEGDYGHVEDIIQEYKANRDTIDSNNLIHKFSERKEHHQELTNEKSVEDGAHYFPDGNQSEDRKVKKRKKKSKSQGNVEVVNSDMPLSVEQSRETIEEGGNKREDAKTSQVRTLSNGLVIQELEMGTEDGKIAASGKKISIYYTGKLKENGAIFESNADQAPLKFRLGKGKVMKGWDVGLEGMRVGEKRRLVIPPSMTSSSDEPNAKIPPNSWLVYDIELVKVH 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 366 394 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 102 254 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 504 518 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 114 128 - -
Gabi1821g00002 652 Gene3D - 516 652 IPR046357 GO:0003755
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 222 241 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 339 355 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 192 207 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 523 537 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 463 491 - -
Gabi1821g00002 652 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 394 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 463 538 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 314 432 - -
Gabi1821g00002 652 Gene3D Nucleoplasmin core domain 1 99 - -
Gabi1821g00002 652 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 560 649 IPR001179 GO:0003755
Gabi1821g00002 652 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 564 652 IPR001179 GO:0003755
Gabi1821g00002 652 SUPERFAMILY FKBP-like 533 651 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 172 189 - -
Gabi1821g00002 652 MobiDBLite consensus disorder prediction 409 432 - -
Gabi1821g00002 652 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1821g00002 Gabi-Chr1821 35854 42420 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1821g00002 564 649 Calmodulin-binding Proteins AT5G48570 40.230 3.02e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1821g00002 K14826 - gmx:100798135 794.653