Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1818g00016 ATGGTCGACTACTCTATAGATGATTTTCACCAGTCATCGATCAATGAGTGTGATACTGAAGCAAAGCAAATGGTGAGGTCTGAAGCCATAGAAGCAGAACAAGCTAACAAGGAAAAATCATATATAGGAGTCAGAAGAAGGCCATGGGGAAAATTTGCCGCTGAGATCAGAGATACAACAAGGCATGGCACACGGGTTTGGCTTGGAACTTTTGATAGTGCAGAAGAAGCTGCTTTAGCTTATGACCAAGCTGCATTTTCCATGAGAGGACCAACCACTGTGCTTAATTTTCCGGTTGAAAGAGTTCGAGAATCTTTGCAAGAGATGAAGTGTGGTTGCAGCGAAGGGAGTTCTCCTGCGTTAGCACTCAAGGAGAGACACCATATCCAACGAAAATTATCAGCAAAGGCTAAGAAAAGCAAAGGGAAACAGGAATCGGAGGCACCAAGTGTGTTGGTGCTAGAGGACATGGGAATTGAATATCTTGAGCAACTTCTGAGCATATCAGATCTAAGTACAAGTGTAAACACCGGCTTATGA 540 0.4352 MVDYSIDDFHQSSINECDTEAKQMVRSEAIEAEQANKEKSYIGVRRRPWGKFAAEIRDTTRHGTRVWLGTFDSAEEAALAYDQAAFSMRGPTTVLNFPVERVRESLQEMKCGCSEGSSPALALKERHHIQRKLSAKAKKSKGKQESEAPSVLVLEDMGIEYLEQLLSISDLSTSVNTGL 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1818g00016 179 PANTHER DNA-BINDING DOMAIN 26 169 IPR044808 GO:0003700|GO:0009873
Gabi1818g00016 179 FunFam Ethylene-responsive transcription factor 2 39 100 - -
Gabi1818g00016 179 SUPERFAMILY DNA-binding domain 40 100 IPR016177 GO:0003677
Gabi1818g00016 179 CDD AP2 39 99 IPR001471 GO:0003700|GO:0006355
Gabi1818g00016 179 SMART rav1_2 40 104 IPR001471 GO:0003700|GO:0006355
Gabi1818g00016 179 ProSiteProfiles AP2/ERF domain profile. 40 98 IPR001471 GO:0003700|GO:0006355
Gabi1818g00016 179 PRINTS Ethylene responsive element binding protein signature 64 80 IPR001471 GO:0003700|GO:0006355
Gabi1818g00016 179 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Gabi1818g00016 179 Gene3D AP2/ERF domain 39 100 IPR036955 GO:0003700|GO:0006355
Gabi1818g00016 179 Pfam AP2 domain 40 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1818g00016 Gabi-Chr1818 165350 165889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1818g00016 38 172 AP2-EREBP Transcription Factor Family AT3G23240 59.124 2.29e-52 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gabi1818g00016 AP2 3.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1818g00016 K14516 - gmx:100527364 205.682