Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi1818g00003 ATGGGAAAGCGCTCCTTTCAAGAATCTCTAAAAGCTCTGGAAGCTGATATTCAGTATGCTAATACCCTGGCATTAGGCCATCCAAGGGATAAAGATGGAGGATGCTATCAGATGAGGCTATCATACGGTCCAGCAGCCCCAATTTTCCTCTTTCTTGTTCAGTGGACAGATTACCGTCTGGCTGGTGCTCTGGGTTTGCTGAGGATTCTAATTTATGTGACTTATGGAAATGGGAAGACTACTATGTCAATATATGAAAGGAAAGCAAGCATTAGACAATTTTACAATTTGGAGGAAAGGAAACAGAAAGAAGTATATGATGTTAGATACCGAAGGAAGATTGAGTTCGAAGAGAGTAGACAATCTGAAATTGACATTGAAAGAGAAGAGGAATGCGGGGTTTGCTTGGAGGTTAAAGCAAAAGTTGTGCTGCCTAATTGCTGCCACTATATGTGCTTGAAGTGCTACAGAGATTGGTGTGTAAGGTCTCAGTCTTGCCCCTTTTGCCGGGATAGCCTGAAGAGAGTAAACTCTGGGGACCTTTGGATTTACACAGACAAGAATGATATTGTTGATGTTGGGACAATTTTCAAAGAGAATTGTAAGATGCTGTTTATGTACTTAGAGAAGTTGCCTCTTATTGTTCCAGACCCCAGACATGTGTCCTATGATCCATTTATAAGGTGA 687 0.4134 MGKRSFQESLKALEADIQYANTLALGHPRDKDGGCYQMRLSYGPAAPIFLFLVQWTDYRLAGALGLLRILIYVTYGNGKTTMSIYERKASIRQFYNLEERKQKEVYDVRYRRKIEFEESRQSEIDIEREEECGVCLEVKAKVVLPNCCHYMCLKCYRDWCVRSQSCPFCRDSLKRVNSGDLWIYTDKNDIVDVGTIFKENCKMLFMYLEKLPLIVPDPRHVSYDPFIR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi1818g00003 228 SMART ring_2 132 169 IPR001841 -
Gabi1818g00003 228 FunFam RING/U-box superfamily protein 110 179 - -
Gabi1818g00003 228 Pfam Zinc finger, C3HC4 type (RING finger) 129 175 - -
Gabi1818g00003 228 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Gabi1818g00003 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 179 IPR013083 -
Gabi1818g00003 228 SUPERFAMILY RING/U-box 121 175 - -
Gabi1818g00003 228 ProSiteProfiles Zinc finger RING-type profile. 132 170 IPR001841 -
Gabi1818g00003 228 PANTHER RING FINGER PROTEIN 41, 151 4 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi1818g00003 Gabi-Chr1818 11253 13864 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi1818g00003 98 170 C3H Transcription Factor Family AT5G41350 31.579 6.44e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi1818g00003 - - gmx:100808567 410.223